Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03082 ATGGCAAGAACCATAAATGGCCTTCATAGCATCTCTGTGAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACAGCAGTGAACAAACTTCATCGAATGCTCAATTTTTTAGTTGCCATTATCATAAAGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTTCTTCTTTTTGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAAACTGTATTTGAAGCAATCATATTCTTATTTGTCATGCACCCGTTCGATGTGGGAGATAGATGTGAAATTGATGCAATCCAGATGGTTGTAGAAGAAATGAACATATTGACTACCGTATTTCTTAGATTCGATAATCAAAAGATAACGATTCCTAACGCTGTTCTTGCTACTAAGGCCATACATAATTTCTACCGTAGTCCTGACATGGGAGATTCTGTTGAATTCCTTATCCATGTAGCTACCCCAGCAGAAAAGATTTCACTCATAAAACACAGAATAAATAGTTTCGTTGATAACAAGAAGGAGCATTGGTATCCTTCACCTTTTATAGTCTTGAAGGATCACGAACAATTGAATATGGTGAGAATGGCGATCTGGCCAACTCACAGAATGAACTTCCAAGACATGGGAGAAAGATTTATCAGGAGGTCTCTTCTTGTTGAAGAGTTGATGAAGATTTTCAAAGATCTTGACATTCAATACCGTCTCATGCCTCTCGACATTAACGTTAGAGCTGTGCCTACCACTTCTGAACGTCTTCCACCTAGTTGGTCAGCATTCACAAATTGA 819 0.3871 MARTINGLHSISVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIIKVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDAIQMVVEEMNILTTVFLRFDNQKITIPNAVLATKAIHNFYRSPDMGDSVEFLIHVATPAEKISLIKHRINSFVDNKKEHWYPSPFIVLKDHEQLNMVRMAIWPTHRMNFQDMGERFIRRSLLVEELMKIFKDLDIQYRLMPLDINVRAVPTTSERLPPSWSAFTN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03082 272 FunFam Predicted mechanosensitive ion channel 97 146 - -
Trre16g03082 272 SUPERFAMILY Sm-like ribonucleoproteins 87 146 IPR010920 -
Trre16g03082 272 Pfam Mechanosensitive ion channel 39 242 IPR006685 GO:0016020|GO:0055085
Trre16g03082 272 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 11 267 IPR016688 -
Trre16g03082 272 Gene3D - 97 146 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03082 Trre-Chr16 26762022 26763591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03082 13 268 Mechanosensitive Ion Channel Family AT1G53470 67.308 7.63e-123 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03082 K22048 - gmx:100789882 453.366