Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03066 ATGGGCAGACAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACAGCTGAAGAAGATAAGAAACTCATCAATTTCATTCTTACCAATGGACAATGTTGTTGGCGTGCTGTGCCTAAACTTGCTGGACTTAAGCGTTGTGGTAAGAGTTGTCGTCTTCGTTGGACTAACTATCTTCGCCCTGATTTAAAGAGAGGTCTTCTTACTGAAGCAGAGGAGCAGCTTGTTATTGATCTTCATGCCCGTCTTGGCAATAGGTGGTCGAAGATTGCTTCCAGATTACCCGGGAGAACAGATAATGAGATTAAAAATCATTGGAACACCCACATCAAGAAAAAACTCATTAAGATGGGAATTGATCCAATTACTCATGAACCTTTGAATAAACAAGCAGCATCCCAGGATAGTTCATCATCCCCTGCAGAGAATTTGTCACAACCAGACAAAAATCATGAAGAGAAGGAAATTGATGGGATTGTCAACTCAGAGGAGAATTCAAGTTCATCCCCAACTGAAAATTCTTCTGGAGAAGAATCCCTTTTGCTAGATAGCATTTGCAGTGATGATTCTCTAATGAATAGTCTATGGTTAGATGAAACACCATTGGTTGAAGCACTTTGGGAAATGGACACTACACCTATAATAGAGATAGAGAATACCAAAAATGAGATGAATTTTGTGCCTTCTTGGGAAGATAATTGTTCTTGGTTATTGGATTGTCAAGACTTTGGTATTCAGGATTTTGGATTTAATTGCTTCAATGAGATAGAATCAAGTACACTGCAAACTATAGGCATGAAGGAAAATATTTAA 819 0.3883 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLIKMGIDPITHEPLNKQAASQDSSSSPAENLSQPDKNHEEKEIDGIVNSEENSSSSPTENSSGEESLLLDSICSDDSLMNSLWLDETPLVEALWEMDTTPIIEIENTKNEMNFVPSWEDNCSWLLDCQDFGIQDFGFNCFNEIESSTLQTIGMKENI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03066 272 MobiDBLite consensus disorder prediction 163 180 - -
Trre16g03066 272 CDD SANT 16 61 IPR001005 -
Trre16g03066 272 SMART sant 66 114 IPR001005 -
Trre16g03066 272 SMART sant 13 63 IPR001005 -
Trre16g03066 272 Gene3D - 71 159 - -
Trre16g03066 272 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Trre16g03066 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre16g03066 272 Gene3D - 12 67 - -
Trre16g03066 272 FunFam MYB transcription factor 70 147 - -
Trre16g03066 272 MobiDBLite consensus disorder prediction 161 180 - -
Trre16g03066 272 MobiDBLite consensus disorder prediction 130 147 - -
Trre16g03066 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre16g03066 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre16g03066 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre16g03066 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre16g03066 272 FunFam MYB transcription factor 11 67 - -
Trre16g03066 272 MobiDBLite consensus disorder prediction 130 155 - -
Trre16g03066 272 CDD SANT 71 112 IPR001005 -
Trre16g03066 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre16g03066 272 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03066 Trre-Chr16 26432715 26434079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03066 1 252 MYB Transcription Factor Family AT4G22680 60.902 6.02e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g03066 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03066 K09422 - gmx:100786965 451.44