Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03049 ATGATGAAATTATCATCATCATCACTTGATGAGTCTAATTACCCTTCATACTCAAGTTCATCATCGGAAACAAGTTGCTACGAAGAAATCTTGTTAGCGTCGGAGCAACCAAAGAAGAAAGCGGGGAGAAGAAAATTCAAGGAGACAAGACATCCAGTATATAGAGGAATACGAAAGAGAAACAACAACAAATGGGTTTGTGAAGTTCGTGTTCCAAACGACAAATCCACGAGGATTTGGTTAGGAACATATCCAACACCTGAAATGGCTGCACGTGCACACGACGTTGCTGCTTTGGCACTTCGTGGAAAATCAGCTTGTCTTAACTTTGCTGATTCGGCTTGGCGGTTGCCGTTGCCGGCGTCGACTGATCCAAAGGAGATTAGGAAAATGGCTGCGGAAGCTGCTTTGGCATTTGCTGTTGAAGATGGGACTGTGTGTGGAAGTTCCAAAGCTGGAGCAGGACATGTTGCATGA 477 0.4465 MMKLSSSSLDESNYPSYSSSSSETSCYEEILLASEQPKKKAGRRKFKETRHPVYRGIRKRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTDPKEIRKMAAEAALAFAVEDGTVCGSSKAGAGHVA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03049 158 SUPERFAMILY DNA-binding domain 53 113 IPR016177 GO:0003677
Trre16g03049 158 CDD AP2 54 113 IPR001471 GO:0003700|GO:0006355
Trre16g03049 158 SMART rav1_2 53 117 IPR001471 GO:0003700|GO:0006355
Trre16g03049 158 ProSiteProfiles AP2/ERF domain profile. 53 111 IPR001471 GO:0003700|GO:0006355
Trre16g03049 158 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Trre16g03049 158 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 140 IPR045277 GO:0003700
Trre16g03049 158 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g03049 158 FunFam Ethylene-responsive transcription factor 2 52 112 - -
Trre16g03049 158 Pfam AP2 domain 52 103 IPR001471 GO:0003700|GO:0006355
Trre16g03049 158 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Trre16g03049 158 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03049 Trre-Chr16 26237307 26237887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03049 4 145 AP2-EREBP Transcription Factor Family AT5G51990 66.197 1.44e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g03049 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03049 - - pvu:PHAVU_003G212800g 200.675