Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03048 ATGTCTTCTTCATCATCTTCTTCTTCTTCCAAAAGGCACCCAATATACCACGGCATTCGAAGCCGATCAGGAAAATGGGTGACTGAAATGCGTGAGCCTCGGAAGACAAACCGCATATGGTTAGGCACATTCTCCACCCCTGAGATGGCAGCCGCGGCATATGATGTCGCGGCTTTGGCCCTCAAAGGTAGGGAAGCCGTACTAAACTTCCCTGCCTATGTCGGCAAGTATCCGGTGCCAGCGTCCAATTCACCGGATGACATCCGCGCTGCTGCCACTGCTGCAGCCGAATTAGTGAAGGCTGAAGGTGTTAATGGTGCTGGCTTTGATGTTAGTCCTTTGTATGAAGAAACTGAGTTTCTTGATGAAGAAGCTATATTCTCCATGCCAAGATTGATGGTAGAAATGGCTGAGGGAATGCTGCTTTCTCCTCCCAGAATGAATCCACCACCGTCTGAGTACTTGCCTGAATATTACACTTTGGGAGAAAGTTTGTGGAACTATTAA 507 0.4832 MSSSSSSSSSKRHPIYHGIRSRSGKWVTEMREPRKTNRIWLGTFSTPEMAAAAYDVAALALKGREAVLNFPAYVGKYPVPASNSPDDIRAAATAAAELVKAEGVNGAGFDVSPLYEETEFLDEEAIFSMPRLMVEMAEGMLLSPPRMNPPPSEYLPEYYTLGESLWNY 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03048 168 ProSiteProfiles AP2/ERF domain profile. 15 71 IPR001471 GO:0003700|GO:0006355
Trre16g03048 168 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Trre16g03048 168 Pfam AP2 domain 18 63 IPR001471 GO:0003700|GO:0006355
Trre16g03048 168 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Trre16g03048 168 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Trre16g03048 168 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Trre16g03048 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 151 IPR045277 GO:0003700
Trre16g03048 168 FunFam Ethylene-responsive transcription factor 2 14 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03048 Trre-Chr16 26229692 26230198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03048 10 168 AP2-EREBP Transcription Factor Family AT5G52020 54.023 9.04e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre16g03048 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03048 - - gmx:100778793 216.853