Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03037 ATGAACATCAACCACAACAACAACAACAACAACCTCAACATCATCATCAACAACAACAACATAAGTGTTTTTCATTTGGGAATTGTTCATCAGCTACAAATTTCAAGGTGGAAGAGAGAAAAAAAAGAAGCAGAAGCATTGGAGAGTGAGTGTGAAAATACAAAGCTACCATCAATGAGCACACAGAGATTGGATTTACCATGTAGCTTCCCTCGGAAAGACGGTTCTTCGCGTTCGCAGCAGACATTGAGGCCGGTAGGGATATCAGTGGAGAAGACTGAAGTCAAGAACAGCAGCAACAACAGCAGCAGTACTTGTTCTCTGCAACAGAACATTCGGTTACCGCCTTTAGCAACAACTGCACAGACATTGGGAGAGATTAAGGATGAAGAGTTTTGGGAGAAAGGTGGGAGGAGTTTGAAGAGACTTGCAGAACATGGATCTTTGGACGAGTCTTTTACTAACAGGGTTAAGAGGAAAAAGGGTGATGAGAATTTTGATGAATTTGAAAGGGAAAGTTTCAGTTTGGCACAATTTGGTGCTGGAAACTTTTGGTCTGTTCATGGTTTTGGAGGGTTTAATAATAGCCCTTCACTTCCTTTCTCTTTGAATTGTTCTGGAGATGAGGAAAGGGTTTGTTTTGCTCCTGCTGAAGTGGTTTCTGCACCTTTGCCTTTGTCCAACAATCCTTGGCTTGAATCTGCTGTAACAAAGATCACCAATTTTGGTGAAGGTAGCCACCAGCATCAACATCATCATGTCAACGAAGGTTCGGTTTCTAATGGTTCATCAGAAAGTCAGAGTTTGAGCCTGAGGTTGAATGAGAATGCATCAGAACATGAAGATGGTAATGGTTCAGGGAATCCTTATCAGCATGAAGGAACTGAAGTGGAGACGGGAGAAGAGGACGAAGAAGAGGAGCATCGCGGATTTGAGCTTTTGAGCTTGCTTACCGGTTGTGTTGATGCTATTGGATCAAGGAATGTTGCTGCAATCAACCATTTCATTGCAAAATTGGGTGATCTTGCATCTCCAAGAGGAACCATGATAAGCCGAATTTGTGCTTATTATACAGAAGCCTTAGCCATCAGAGTCACCAGGCTTTGGCCTCATGTTTTTCAAATCACAGCCACTTCTCGCGATTTCGATAGGGTGGTGGATGACGATGAAATGATCACTGCATTGAGGCTTCTTAACCAGGTTACCCCAATTCCGAAGTTTCTTCATTTCACATCAAATGAGATGCTGTTGAGGGCTTTTGAAGGGAAAGAAAGGGTTCACATTATAGACTTTGACATAAAGCAAGGACTTCAATGGCCTAGCTTGTTCCAAAGTTTAGCTTCAAGGACTAATCCTCCAAGCCATATACGAATCACGGGCGTGGGGGAATCGAAGCAAGAGTTGAATGAAACCGGAGACAGACTAGCGGGGTTTGCCGAGGCTTTGAACCTTCCCTTTGAGTTCCATCCTGTGGTGGACAGACTTGAAGATGTTAGGCTTTGGATGCTTCATGTGAAGGAACATGAAACTGTGGCTGTGAACTGTGTTATGCAACTTCATAAGATCCTTTATGATGGTAGTGGAGGAGCATTGAGGGACTTTTTGGGTCTCATTCGCAGCACCAATCCTACAATGGTGGTTATGGCAGAGCAAGAAGCGGAACACAATGAGGCGAGGTTGGATTCACGAGTGTGCAATTCGTTAAAATATTACTCGGCGCTGTTTGATTCAATTGATCACAGTGGCCTTCCACTGGAGAGTCCAATGAGGATCAAGATAGAGGAGATGTTTGCTAGAGAGATAAGGAACATCATTGCTTGTGAAGGAAGGGACAGGTTGGAGAGGCACAGGAGTTTTGGGAATTGGAGGAAGATGATGGTGGAGCATGGAGGGTTTCGATGCATGGGAGTCACTGACAGAGAAATGATTCAGAGCCAGTTTCTGTTAAGGATGTATTCTTGTGATAATTACAGTGTTCAGAAGCAGGAGCATGAAGGAGCAACGGCACTTACTTTGGGTTGGCTTGATCAACCACTCTACACAGTATCTTCTTGGGCACCGGTGGACGCGGCTGGAAGCTCATCCTCTTTTTCTCAGGCAGCTTGA 2106 0.4421 MNINHNNNNNNLNIIINNNNISVFHLGIVHQLQISRWKREKKEAEALESECENTKLPSMSTQRLDLPCSFPRKDGSSRSQQTLRPVGISVEKTEVKNSSNNSSSTCSLQQNIRLPPLATTAQTLGEIKDEEFWEKGGRSLKRLAEHGSLDESFTNRVKRKKGDENFDEFERESFSLAQFGAGNFWSVHGFGGFNNSPSLPFSLNCSGDEERVCFAPAEVVSAPLPLSNNPWLESAVTKITNFGEGSHQHQHHHVNEGSVSNGSSESQSLSLRLNENASEHEDGNGSGNPYQHEGTEVETGEEDEEEEHRGFELLSLLTGCVDAIGSRNVAAINHFIAKLGDLASPRGTMISRICAYYTEALAIRVTRLWPHVFQITATSRDFDRVVDDDEMITALRLLNQVTPIPKFLHFTSNEMLLRAFEGKERVHIIDFDIKQGLQWPSLFQSLASRTNPPSHIRITGVGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEHETVAVNCVMQLHKILYDGSGGALRDFLGLIRSTNPTMVVMAEQEAEHNEARLDSRVCNSLKYYSALFDSIDHSGLPLESPMRIKIEEMFAREIRNIIACEGRDRLERHRSFGNWRKMMVEHGGFRCMGVTDREMIQSQFLLRMYSCDNYSVQKQEHEGATALTLGWLDQPLYTVSSWAPVDAAGSSSSFSQAA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03037 701 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 263 682 IPR005202 -
Trre16g03037 701 MobiDBLite consensus disorder prediction 244 308 - -
Trre16g03037 701 ProSiteProfiles GRAS family profile. 304 686 IPR005202 -
Trre16g03037 701 Pfam GRAS domain family 314 685 IPR005202 -
Trre16g03037 701 Coils Coil 34 54 - -
Trre16g03037 701 MobiDBLite consensus disorder prediction 255 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03037 Trre-Chr16 26106810 26109673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03037 34 685 GRAS Transcription Factor Family AT1G63100 54.240 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre16g03037 GRAS 7.4e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03037 - - tcc:18606459 855.899