Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03032 ATGTCTCCTTCTCAAGCATATTGTTTTTTGAACAACCTTGCCAATGCGACAAATGAGAGTAGTATAAAAGTCCGTTTTGCTCGAATGTGGGACAATATGAATGTTCGCAAGCAAAACGAAATGATTAGCATTGACATGGTGTTGATTGATGAAGAGTCCAATTATATCCATGCATCACTTCCTAAGAAATTTGCACCCAAATTCAGGAAGAAAAACCTGCAAGAAGGAAAGATATATGTCGTCAACCAATTTGAGGTGTTAGCCAATAAAAAGAGCTATGCTGTGGTTAAAAACAATTCTTCAATGTTGCAGTTCAATGATGATACCACATACAGTGAGGTGGAAGACGATGACAGCATCCTTCTCCATGTTTTTGAGTTTGTTAAATATGCACATTTGGAATCTCGGATAGACAAACATGTGTTGACAGATATAATTGGAGTTATAGTTGATGTCAATCCAATTGAGGAAAGGAAAGTTCCTGGTGGTAAAGTGGATATGCTGTCAATTCGGCTAAAAGATATAAGTGGGAACATAATCAACGTCACGTTGTGGGGTCAGCATGCTACAATTTTTGAGGACACCCTCAAGGGGAATTTGTGTGACGCTCCTGACCCAAATGTTGCAGTCATCACATCCACTACATCTAAGAGATATCAGGGTGATTTGTCTCTCAACTCATCAAGTTCAACAAAGATTTATGTCAATATAGACATACCCGAGGCAGCTGAACTCATTCAATCATTCAAGAGTACCAATGTTCTGCATTCATCTGCAAATGCAAGTCTCACAAATTCTGCTATCTTGGACAAGACAAGGACTATCTCTGAAATTTTGAGCTCCGCAGTTTCAGGGAGTAATACGGCTGCTGTGTTTAACTGTGTTGCAACAGTGGACGAGATTTTTGATAAAAATGGATGGTATTATGTCTCATGTCCTAAGTGCAAAAAAAGTGCTTCTGCTGCAGAAACACACTTCAAGTGTGAATTCTGTCATGAAAGTGTGGATTACCCCATTACAAGGTATCGCTTGGAGCTTGGTGTCAAGGACTCTACAGGTTCGACTATATTTGTATTGTTTGATGATGTTGCTGAGCAAGTGGCACAGATGAAATTAGTTGATCTGACCGCAACTTTAGAGAATGAAACTGAGGATGGTTCATCAATACCACATCAACTGAAAAGGATTATTGGGACTATACATATATTTCAAATTAAAATGAAATCTTACTTTGAGGGTCATGGAAGACAGAGTTTCACAGTGAGTAGGATTGTGAAGCCTAAGGTGAAGGTAGAGAAAGATGACAAGCTTGACAGCGAATGTAATACCTCAAGTAGTTGTCCAAAAATAATGACACCAAGGTTACCACAAAAGAGAAGAAGGTTACAATATGAAGAGGAGTCTAACGATGTGGAGCAGAAAGAGGTTGCATCGGATTTGGAAGAGTGA 1449 0.3906 MSPSQAYCFLNNLANATNESSIKVRFARMWDNMNVRKQNEMISIDMVLIDEESNYIHASLPKKFAPKFRKKNLQEGKIYVVNQFEVLANKKSYAVVKNNSSMLQFNDDTTYSEVEDDDSILLHVFEFVKYAHLESRIDKHVLTDIIGVIVDVNPIEERKVPGGKVDMLSIRLKDISGNIINVTLWGQHATIFEDTLKGNLCDAPDPNVAVITSTTSKRYQGDLSLNSSSSTKIYVNIDIPEAAELIQSFKSTNVLHSSANASLTNSAILDKTRTISEILSSAVSGSNTAAVFNCVATVDEIFDKNGWYYVSCPKCKKSASAAETHFKCEFCHESVDYPITRYRLELGVKDSTGSTIFVLFDDVAEQVAQMKLVDLTATLENETEDGSSIPHQLKRIIGTIHIFQIKMKSYFEGHGRQSFTVSRIVKPKVKVEKDDKLDSECNTSSSCPKIMTPRLPQKRRRLQYEEESNDVEQKEVASDLEE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03032 482 CDD RPA1_DBD_B_like 144 250 - -
Trre16g03032 482 SUPERFAMILY Nucleic acid-binding proteins 272 434 IPR012340 -
Trre16g03032 482 Gene3D - 8 117 IPR012340 -
Trre16g03032 482 Pfam Replication protein A OB domain 137 235 IPR031657 -
Trre16g03032 482 CDD RPA1_DBD_C 275 440 IPR047192 -
Trre16g03032 482 SUPERFAMILY Nucleic acid-binding proteins 125 251 IPR012340 -
Trre16g03032 482 Pfam Replication factor-A C terminal domain 292 432 IPR013955 -
Trre16g03032 482 CDD RPA1_DBD_A_like 21 110 - -
Trre16g03032 482 PANTHER OS03G0429900 PROTEIN 16 456 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre16g03032 482 Gene3D - 119 257 IPR012340 -
Trre16g03032 482 MobiDBLite consensus disorder prediction 458 482 - -
Trre16g03032 482 Gene3D - 258 439 IPR012340 -
Trre16g03032 482 MobiDBLite consensus disorder prediction 435 482 - -
Trre16g03032 482 SUPERFAMILY Nucleic acid-binding proteins 8 119 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03032 Trre-Chr16 26068390 26070829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03032 10 445 Core DNA Replication Machinery Family AT4G19130 23.778 7.91e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03032 - - mtr:120580096 472.626