LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g03029	ATGGGAAAAGCTTCACGCTGGTTTCGCGGTCTTCTCCGTCTCAAAAAATCAGAACACAACACTTCTGATCACAAACCACCTAAAGAGAAACGTCGATGGAGTTTCGTCAAATCATACAGAGAAGAACAACCACATAACACCCACGTCACCGTAGAAACAGAACACGTCCAAAACAACAACAAACAAGCCATCGCCGTCGCTGCTGCCACCGCTGCAGCCGCTGAAGCCGCCGTAGCCGCTGCTCAAGCTGCTGCCGCCGTTGTCAGATTCAATTATAGCAGTAACGGAATCGTCAGGATACGCGAACAATGGGCTGCCGTTAAGATCCAATCTGCTTTTCGAGGAAGTTTGGCGAGAAAGGCGCTTCGAGCATTAAAAGGGTTGGTGAAGCTGCAGGCATTGGTGAGAGGTCACATTGAGCGGAAACGAACAGCAGAGTGGCTCAAAAAAATGCAATCACTTTTAAGGGCACAGGCACGATATAATGCAGCGCGTACAATGCAAATCTCACATTCTCATATAAAATCTTCTACATTCCACCATCTCCACGGTCCACCAACACCAGAAAAATCTGAAGAAAGTCCTGTTAGATCTAGGAGCGTGAAATCTGAGCATTCACCGGCACTCAAGAGAAACAGTTCCAAATCATGTCTCCCAATCAGCGGCAACTTATCAGAGAATCAGTTAGACGAACAATCATGGAATAGAGTAAGATCACTGATAAGAAATTATAGCAGGAGCGACGAAAAACACGATAGGATTGTTGAAATTGATTCAGGAAAACAACACATGACCACGAAACGTAGAAACCTCTTTCACTCCATCAGCGATACTGATCATTATTACTATAGCCAGAATTTGACCCCTACAAAAGAATCAAAATCTTATCAATCCACTCAAAGTCAATCTTGTGAGGTTCAATCTTATTACAATCCACTCAAACTCAACGAAGGTGAAGAGAGTTCGTTTTGCACCGCAAACAATAGTCCTCAATTATTATCGGCCACTTCAAAAGACGATGGCTACAAAAGAAGCCCTTTTACTCCTACTAGAAGTGATGGCTCAAGAAACTACCTTAGAGGCTATTCTGATTACCCAAGTTACATGGCTTATACAGAATCATCAAAGGCAAAAGTTAGATCTTTGAGTGCACCAAAACAAAGGCCTCAATTTGAGAAATCTGGTTCATCTAATAGGTATTCACTGAATGGACATGACATGGCTAGATTGGCTACTATGAGAACATCTGCATTGCAAACAAGCTTCACTAGTAAAGGCTATCCTGGTTCTGGTCGTTTGGATAAGCTTGGAATGCCTGTGGGGTATAGATGA	1332	0.4332	MGKASRWFRGLLRLKKSEHNTSDHKPPKEKRRWSFVKSYREEQPHNTHVTVETEHVQNNNKQAIAVAAATAAAAEAAVAAAQAAAAVVRFNYSSNGIVRIREQWAAVKIQSAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLKKMQSLLRAQARYNAARTMQISHSHIKSSTFHHLHGPPTPEKSEESPVRSRSVKSEHSPALKRNSSKSCLPISGNLSENQLDEQSWNRVRSLIRNYSRSDEKHDRIVEIDSGKQHMTTKRRNLFHSISDTDHYYYSQNLTPTKESKSYQSTQSQSCEVQSYYNPLKLNEGEESSFCTANNSPQLLSATSKDDGYKRSPFTPTRSDGSRNYLRGYSDYPSYMAYTESSKAKVRSLSAPKQRPQFEKSGSSNRYSLNGHDMARLATMRTSALQTSFTSKGYPGSGRLDKLGMPVGYR	443

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g03029	443	MobiDBLite	consensus disorder prediction	185	209	-	-
	Trre16g03029	443	Pfam	IQ calmodulin-binding motif	104	123	IPR000048	GO:0005515
	Trre16g03029	443	Pfam	IQ calmodulin-binding motif	129	143	IPR000048	GO:0005515
	Trre16g03029	443	ProSiteProfiles	IQ motif profile.	102	130	IPR000048	GO:0005515
	Trre16g03029	443	PANTHER	IQ-DOMAIN 5-RELATED	1	403	-	-
	Trre16g03029	443	SMART	iq_5	101	123	IPR000048	GO:0005515
	Trre16g03029	443	SMART	iq_5	124	145	IPR000048	GO:0005515
	Trre16g03029	443	MobiDBLite	consensus disorder prediction	175	221	-	-
	Trre16g03029	443	Pfam	Protein of unknown function (DUF4005)	329	410	IPR025064	-
	Trre16g03029	443	Gene3D	-	101	153	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g03029	Trre-Chr16	26045317	26049010	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g03029	103	443	IQD Protein Family	AT4G23060	43.251	2.61e-63	210

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g03029	-		-	gmx:100793587	505.368

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