Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03029 ATGGGAAAAGCTTCACGCTGGTTTCGCGGTCTTCTCCGTCTCAAAAAATCAGAACACAACACTTCTGATCACAAACCACCTAAAGAGAAACGTCGATGGAGTTTCGTCAAATCATACAGAGAAGAACAACCACATAACACCCACGTCACCGTAGAAACAGAACACGTCCAAAACAACAACAAACAAGCCATCGCCGTCGCTGCTGCCACCGCTGCAGCCGCTGAAGCCGCCGTAGCCGCTGCTCAAGCTGCTGCCGCCGTTGTCAGATTCAATTATAGCAGTAACGGAATCGTCAGGATACGCGAACAATGGGCTGCCGTTAAGATCCAATCTGCTTTTCGAGGAAGTTTGGCGAGAAAGGCGCTTCGAGCATTAAAAGGGTTGGTGAAGCTGCAGGCATTGGTGAGAGGTCACATTGAGCGGAAACGAACAGCAGAGTGGCTCAAAAAAATGCAATCACTTTTAAGGGCACAGGCACGATATAATGCAGCGCGTACAATGCAAATCTCACATTCTCATATAAAATCTTCTACATTCCACCATCTCCACGGTCCACCAACACCAGAAAAATCTGAAGAAAGTCCTGTTAGATCTAGGAGCGTGAAATCTGAGCATTCACCGGCACTCAAGAGAAACAGTTCCAAATCATGTCTCCCAATCAGCGGCAACTTATCAGAGAATCAGTTAGACGAACAATCATGGAATAGAGTAAGATCACTGATAAGAAATTATAGCAGGAGCGACGAAAAACACGATAGGATTGTTGAAATTGATTCAGGAAAACAACACATGACCACGAAACGTAGAAACCTCTTTCACTCCATCAGCGATACTGATCATTATTACTATAGCCAGAATTTGACCCCTACAAAAGAATCAAAATCTTATCAATCCACTCAAAGTCAATCTTGTGAGGTTCAATCTTATTACAATCCACTCAAACTCAACGAAGGTGAAGAGAGTTCGTTTTGCACCGCAAACAATAGTCCTCAATTATTATCGGCCACTTCAAAAGACGATGGCTACAAAAGAAGCCCTTTTACTCCTACTAGAAGTGATGGCTCAAGAAACTACCTTAGAGGCTATTCTGATTACCCAAGTTACATGGCTTATACAGAATCATCAAAGGCAAAAGTTAGATCTTTGAGTGCACCAAAACAAAGGCCTCAATTTGAGAAATCTGGTTCATCTAATAGGTATTCACTGAATGGACATGACATGGCTAGATTGGCTACTATGAGAACATCTGCATTGCAAACAAGCTTCACTAGTAAAGGCTATCCTGGTTCTGGTCGTTTGGATAAGCTTGGAATGCCTGTGGGGTATAGATGA 1332 0.4332 MGKASRWFRGLLRLKKSEHNTSDHKPPKEKRRWSFVKSYREEQPHNTHVTVETEHVQNNNKQAIAVAAATAAAAEAAVAAAQAAAAVVRFNYSSNGIVRIREQWAAVKIQSAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLKKMQSLLRAQARYNAARTMQISHSHIKSSTFHHLHGPPTPEKSEESPVRSRSVKSEHSPALKRNSSKSCLPISGNLSENQLDEQSWNRVRSLIRNYSRSDEKHDRIVEIDSGKQHMTTKRRNLFHSISDTDHYYYSQNLTPTKESKSYQSTQSQSCEVQSYYNPLKLNEGEESSFCTANNSPQLLSATSKDDGYKRSPFTPTRSDGSRNYLRGYSDYPSYMAYTESSKAKVRSLSAPKQRPQFEKSGSSNRYSLNGHDMARLATMRTSALQTSFTSKGYPGSGRLDKLGMPVGYR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03029 443 MobiDBLite consensus disorder prediction 185 209 - -
Trre16g03029 443 Pfam IQ calmodulin-binding motif 104 123 IPR000048 GO:0005515
Trre16g03029 443 Pfam IQ calmodulin-binding motif 129 143 IPR000048 GO:0005515
Trre16g03029 443 ProSiteProfiles IQ motif profile. 102 130 IPR000048 GO:0005515
Trre16g03029 443 PANTHER IQ-DOMAIN 5-RELATED 1 403 - -
Trre16g03029 443 SMART iq_5 101 123 IPR000048 GO:0005515
Trre16g03029 443 SMART iq_5 124 145 IPR000048 GO:0005515
Trre16g03029 443 MobiDBLite consensus disorder prediction 175 221 - -
Trre16g03029 443 Pfam Protein of unknown function (DUF4005) 329 410 IPR025064 -
Trre16g03029 443 Gene3D - 101 153 - -
Trre16g03029 443 ProSiteProfiles IQ motif profile. 126 153 IPR000048 GO:0005515
Trre16g03029 443 MobiDBLite consensus disorder prediction 334 355 - -
Trre16g03029 443 MobiDBLite consensus disorder prediction 379 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03029 Trre-Chr16 26045317 26049010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03029 103 443 IQD Protein Family AT4G23060 43.251 2.61e-63 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03029 - - gmx:100793587 505.368