Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03028 ATGGCATCATCATCATCCTCCTCAAGCACCAACACCGCCAACTACGACATACCGTGGGTTGAGAAGTACCGTCCTACCAAGGTCATCGACATCGTCGGCAATGAAGACGCCGTCTCTCGTCTCCAAGTCATCGCTCGTGACGGCAACATGCCCAACCTCATTTTATCAGGTCCTCCTGGAACTGGAAAAACCACTAGTATACTCGCCCTTGCTCACGAACTTCTCGGTCCCAATTACATAGAAGCTGTTCTCGAACTCAATGCATCAGATGACAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAAAAGAAAGTAACGCTTCCTCCAGGCCGACACAAAATTGTTATACTTGATGAAGCTGACAGCATGACATCTGGAGCACAACAAGCTTTGAGAAGGACAATGGAGATATATTCCAACTCTACTCGTTTTGCGCTTGCTTGCAATACATCTTCTAAGATTATTGAGCCGATTCAGAGTAGGTGTGCCATTGTGAGATTTTCGCGATTGTCTGATCAAGAGATACTTGGTCGCCTCATGGTTGTGGTTCAGGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAGGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGGATTGAACAACTTGCAAGCAACATTCAGTGGGTTCCAGTTTGTTAACCAAGCAAATGTTTTTAAGGTTTGTGACCAACCGCATCCACTGCATGTGAAGAATATGGTGCGCAATGTGATTGAAGGGAATTTTGATGAGGCTTGTTCGGGGCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACCACACTTTTTCGTATCATAAAAAGTTATGATATGGCGGAGTACTTGAAACTGGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAAATGTGCGGTCTGTTGGCCAAGCTTTCTCTTGTTCGCGACACTGCTAAAGCTGCATGA 1008 0.4484 MASSSSSSSTNTANYDIPWVEKYRPTKVIDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYIEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRDTAKAA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03028 335 FunFam Replication factor C subunit 4 11 174 - -
Trre16g03028 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 236 IPR027417 -
Trre16g03028 335 CDD AAA 32 169 - -
Trre16g03028 335 Gene3D - 239 330 - -
Trre16g03028 335 Gene3D - 10 174 IPR027417 -
Trre16g03028 335 Gene3D - 175 238 - -
Trre16g03028 335 CDD HLD_clamp_RFC 174 236 - -
Trre16g03028 335 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 18 319 - -
Trre16g03028 335 Pfam Replication factor C C-terminal domain 239 324 IPR013748 -
Trre16g03028 335 FunFam Replication factor C subunit 4 175 238 - -
Trre16g03028 335 Pfam ATPase family associated with various cellular activities (AAA) 53 171 IPR003959 GO:0005524|GO:0016887
Trre16g03028 335 FunFam replication factor C subunit 2 239 331 - -
Trre16g03028 335 SUPERFAMILY post-AAA+ oligomerization domain-like 238 329 IPR008921 GO:0003677|GO:0006260
Trre16g03028 335 SMART AAA_5 49 175 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03028 Trre-Chr16 26038479 26041946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03028 15 334 Core DNA Replication Machinery Family AT1G63160 91.875 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03028 K10755 - rcu:8265440 617.076