Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03013 ATGATCACCTTAGGTCTCCACTTTGGTAACAAGAAAATATTCAAGGGAGCTAGTCTTTCAGAGTCCAACTTGCCACCTCACAAGTTTTATCCATTAATAAGTGCAATTGATGCCAAAGCTGCTGATGCTTCTTCTGCCAATGCTCTTCTTTGCAAAAATGGAACTCTGGATCCAAAAAAGGCTAAAGGAAAAATTGTTGTATGTCTTCGAGGTGTAAATGATAGAACTGATAAGGGTGTGCAAGCTGCTCATGCAGGTGCTGTTGGTATGGTTTTGGTTAATAATGAAGATTCAGGGAATGAAATTCTAGCTGATCCTCATGTTCTTCCTGCTTCACATCTTACCTTTAAAGATGGCACCTACCTTTTTAATTACATTAACATCACCAAGTCTCCTATGGCTTCAATTTCTAGAGTGGAAACACAATTGGGTGTAAAGCCAGCTCCGGTTATGGCTTCATTTTCATCAAGAGGACCTAATATCATTGATCCATCAATCCTCAAGCCCGACATTACAGCACCGGGAGTCGATATAATTGCTGCTTTTAGTGAAGTTGCATCTCCCTCTGAACAAAAATCTGATAAACGAAAATCTTCTTTCATTTCTTTGTCCGGAACTTCAATGTCATGTCCTCATGTTTCTGGTGTTGTTGGTTTAATAAAATCTCTTCATCCTGATTGGAGTTCGGCTGCTATTAAGTCGGCGATTATGACCACAGCAAGAATAAAAGATAATACCGGAAAGCTTCTGTTGGATTCGTCACTGGAAAATGCTACTCCATTTGCATATGGTGCGGGGCACATCCAACCTAATCGTGCTGTGGATCCTGGACTTGTTTACGACCTAAATGTTACTGACTATATGAACTATTTGTGCAACCGTGGCTACAAGGGTTCTCATCTTAGCGTGTTCTATCGCAAACAATACACTTGTCCAAAATCTTTCAATATATTAGATTTCAATTATCCGACAATCTCAATTTCCAACTTTAAGATTGGACATTCTATAAATGTTACTCGTACTCTTACCAATGTTGGACCCCCAAGCACATATAGAGTTCGCATTGCAATGCCTCGAGAAGTTTTTGTCTCCGTCGAGCCGAAGGTACTAAACTTTAAGGCAAAAGATGAAAAGAGAGAGTTTAGAATCACTTTGAATTTGAGATCTTTAACTAACCATAGTAATGATTATGTATTTGGGAGGTTGGATTGGACTGATGGCAAGCATCATGTTAGGAGTTATATTGCAATTAAGCCACAATTATGA 1266 0.391 MITLGLHFGNKKIFKGASLSESNLPPHKFYPLISAIDAKAADASSANALLCKNGTLDPKKAKGKIVVCLRGVNDRTDKGVQAAHAGAVGMVLVNNEDSGNEILADPHVLPASHLTFKDGTYLFNYINITKSPMASISRVETQLGVKPAPVMASFSSRGPNIIDPSILKPDITAPGVDIIAAFSEVASPSEQKSDKRKSSFISLSGTSMSCPHVSGVVGLIKSLHPDWSSAAIKSAIMTTARIKDNTGKLLLDSSLENATPFAYGAGHIQPNRAVDPGLVYDLNVTDYMNYLCNRGYKGSHLSVFYRKQYTCPKSFNILDFNYPTISISNFKIGHSINVTRTLTNVGPPSTYRVRIAMPREVFVSVEPKVLNFKAKDEKREFRITLNLRSLTNHSNDYVFGRLDWTDGKHHVRSYIAIKPQL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03013 421 Gene3D Peptidase S8/S53 domain 144 287 IPR036852 GO:0004252|GO:0006508
Trre16g03013 421 FunFam Subtilisin-like protease SBT1.5 291 420 - -
Trre16g03013 421 Pfam PA domain 44 121 IPR003137 -
Trre16g03013 421 SUPERFAMILY Subtilisin-like 148 275 IPR036852 GO:0004252|GO:0006508
Trre16g03013 421 Pfam Fibronectin type-III domain 319 417 IPR041469 -
Trre16g03013 421 SUPERFAMILY PA domain 45 126 IPR046450 -
Trre16g03013 421 FunFam subtilisin-like protease SBT1.5 4 143 - -
Trre16g03013 421 Gene3D - 291 419 - -
Trre16g03013 421 ProSiteProfiles Serine proteases, subtilase domain profile. 1 274 - -
Trre16g03013 421 Gene3D - 6 143 - -
Trre16g03013 421 ProSitePatterns Serine proteases, subtilase family, serine active site. 205 215 IPR023828 -
Trre16g03013 421 Pfam Subtilase family 122 266 IPR000209 GO:0006508|GO:0008236
Trre16g03013 421 CDD PA_subtilisin_like 2 136 - -
Trre16g03013 421 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 8 416 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03013 Trre-Chr16 25887577 25889962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03013 10 418 Subtilisin-like Serine Gene Family AT5G59810 56.341 2.05e-150 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03013 - - mtr:11408228 535.413