Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03012 ATGCTCAGAGTTTTCTTTATCAGAGTCACCTTAGGTCTCCACTTTGGTAACAAGAAAATATTCAAGGGAGCTAGTCTTTCAGAGTCCAACTTGCCACCTCACAAGTTTTATCCATTAATAAGTGCAATTGATGCCAAAGCTGCTGATGCTTCTTCTGCCAATGCTCTTCTTTGCAAAAATGGAACTCTGGATCCAAAAAAGGCTAAAGGAAAAATTGTTGTATGTCTTCGAGGTGTAAATGATAGAACTGATAAGGGTGTGCAAGCTGCTCATGCAGGTGCTGTTGGTATGGTTTTGGTTAATAATGAAGATTCAGGGAATGAAATTCTAGCTGATCCTCATGTTCTTCCTGCTTCACATCTTACCTTTAAAGATGGCACCTACCTTTTTAATTACATTAACATCACCAAGTCTCCTATGGCTTCAATTTCTAGAGTGGAAACACAATTGGGTGTAAAGCCAGCTCCGGTTATGGCTTCATTTTCATCAAGAGGACCTAATATCATTGATCCATCAATCCTCAAGCCCGACATTACAGCACCGGGAGTCGATATAATTGCTGCTTTTAGTGAAGTTGCATCTCCCTCTGAACAAAAATCTGATAAACGAAAATCTTCTTTCATTTCTTTGTCCGGAACTTCAATGTCATGTCCTCATGTTTCTGGTGTTGTTGGTTTAATAAAATCTCTTCATCCTGATTGGAGTTCGGCTGCTATTAAGTCGGCGATTATGACCACAGCAAGAATAAAAGATAATACCGGAAAGCTTCTGTTGGATTCGTCACTGGAAAATGCTACTCCATTTGCATATGGTGCGGGGCACATCCAACCTAATCGTGCTGTGGATCCTGGACTTGTTTACGACCTAAATGTTACTGACTATATGAACTATTTGTGCAACCGTGGCTACAAGGGTTCTCATCTTAGCGTGTTCTATCGCAAACAATACACTTGTCCAAAATCTTTCAATATATTAGATTTCAATTATCCGACAATCTCAATTTCCAACTTTAAGATTGGACATTCTATAAATGTTACTCGTACTCTTACCAATGTTGGACCCCCAAGCACATATAGAGTTCGCATTGCAATGCCTCGAGAAGTTTTTGTCTCCGTCGAGCCGAAGGTACTAAACTTTAAGGCAAAAGATGAAAAGAGAGAGTTTAGAATCACTTTGAATTTGAGATCTTTAACTAACCATAGTAATGATTATGTATTTGGGAGGTTGGATTGGACTGATGGCAAGCATCATGTTAGGAGTTATATTGCAATTAAGCCACAATTATGA 1287 0.3908 MLRVFFIRVTLGLHFGNKKIFKGASLSESNLPPHKFYPLISAIDAKAADASSANALLCKNGTLDPKKAKGKIVVCLRGVNDRTDKGVQAAHAGAVGMVLVNNEDSGNEILADPHVLPASHLTFKDGTYLFNYINITKSPMASISRVETQLGVKPAPVMASFSSRGPNIIDPSILKPDITAPGVDIIAAFSEVASPSEQKSDKRKSSFISLSGTSMSCPHVSGVVGLIKSLHPDWSSAAIKSAIMTTARIKDNTGKLLLDSSLENATPFAYGAGHIQPNRAVDPGLVYDLNVTDYMNYLCNRGYKGSHLSVFYRKQYTCPKSFNILDFNYPTISISNFKIGHSINVTRTLTNVGPPSTYRVRIAMPREVFVSVEPKVLNFKAKDEKREFRITLNLRSLTNHSNDYVFGRLDWTDGKHHVRSYIAIKPQL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03012 428 Gene3D Peptidase S8/S53 domain 151 294 IPR036852 GO:0004252|GO:0006508
Trre16g03012 428 Pfam Subtilase family 129 273 IPR000209 GO:0006508|GO:0008236
Trre16g03012 428 FunFam subtilisin-like protease SBT1.5 3 150 - -
Trre16g03012 428 CDD PA_subtilisin_like 9 143 - -
Trre16g03012 428 ProSitePatterns Serine proteases, subtilase family, serine active site. 212 222 IPR023828 -
Trre16g03012 428 Gene3D - 298 426 - -
Trre16g03012 428 Pfam Fibronectin type-III domain 326 424 IPR041469 -
Trre16g03012 428 FunFam Subtilisin-like protease SBT1.5 298 427 - -
Trre16g03012 428 SUPERFAMILY PA domain 52 133 IPR046450 -
Trre16g03012 428 Gene3D - 13 150 - -
Trre16g03012 428 SUPERFAMILY Subtilisin-like 155 282 IPR036852 GO:0004252|GO:0006508
Trre16g03012 428 ProSiteProfiles Serine proteases, subtilase domain profile. 1 281 - -
Trre16g03012 428 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 15 423 IPR045051 -
Trre16g03012 428 Pfam PA domain 51 128 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03012 Trre-Chr16 25887076 25889962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03012 17 425 Subtilisin-like Serine Gene Family AT5G59810 56.341 2.32e-150 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03012 - - mtr:11408228 535.413