Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03006 ATGGCCGCCACCACAACCACCAGTCTAGGCGGAGCCACTGGCGGCGGAGACGATCGAGTTCTCGCAACAGCACAACAGATCTTAAAAAGCCTTAAAGCTCCAAAAGAAGATCGTGAAGACATGCTGTTAATCTTCTCCACCTTCGATAATCGTCTCTCCGGCATCACTGACCTAATCAACGGCGACGATTCAAAATCCTCCGATGGCGCCGACGATGATGACGAAGACCTTGACCGTTTCGAAGCCGCCGAGAAAGTCATACTCGTTGACGCTTCAACCTACACCGAGCCGTCGCGTCAATCTACTTCGCTTTTCGATCCTCCAAATGACCCGGTTGAGTATTTCACCGCCGTTGATGAGATTATTCAGTGGATGGAACACTTTACCATCGCGCCGCCGCATCAATCGTCGGGGAAAACCGGTCAGATCATTTTGGACCGTGCTGAGAACGCGATCCAGCTTGCTATGTCGAGGCTTGAGGATGAGCTTAGTCATGTGCTGATTTGTAATACTGTCCCGCCGGATTCTGTTAGCCGGTGCAGTACTAATCGGAGAAATTCGTTATCTTTCAGTGTGCACGACGGTGCTATCGATGATAATTCTAGCAGCTTTGGTGATGTAAGTGGTCCCGATTCTCATCGGTTTCATGAACGTGGTGTTAGTCTTGGAGATGATTTGTTTGTTGATTTGGTTCGGCCGGAATCGATTATGAATCTGAAAGATATTATTGATCGTATGATTAGGTCTGGTTATGAGATGGAGTGTCTTCAGGTTTATAGTAGTGTTCGTCGTGACGCTTTGGTTGAGTGTTTGGCGATTCTTGGTGTTGAGAAGATGAGTATTGAAGAGGTTCAGAAGGTTGAATGGAAGAGTTTGGATGAGAAAATGAAGAATTGGGTGCAAGCTGTTAAGGTTGTTTTTGGGGTTTTGTTGAGTGGGGAGAAGAGGCTTTGTGATAGTCTTTTTGGTGATTTGGATGATTTGAAGGAGATGTGTTTCAATAAAACTGCTAAAGGTTGTGTTATGATGTTGTTGAATTTTGGTGAAGCTGTTTCCATTTGTAAGAGGTCACCGGAGAAATTGTTTAGAATATTGGATATGTATGAGGCTTTGAGAGATGGTTTGCCTGATTTGGAGGATATGGTGACGGAGGAGTTTGTGATCACTGAGGCAAAGGGTGTGCTTAGAGGACTTGGTGAGGCTGCAAAAGGGACATTTTCTGAATTTGAGAGTTGTATTCGGAACGAGACTTCTAGAAAGCCGGTTCTAACAGGGGATGTTCATCCTTTGCCTAGGTATGTTATGAATTACCTGAAACTGCTTGTGGATTATGGTGATGCCATGGATTCACTTTTGCAAATTAGTGAAGAGGCTCTTTACCGGTTTACAAATGATTTGGGTGGTGATGGTTCCCAGTTAGAGGCTTTGTCCCCTTTAGGACGGCAAATACTGTTGTTGATGTCCGAGCTTGAGTACAATCTCGATGAAAAATCGAAACTTTATGAAGACAGTGCATTGCAGCAGGTGTTTTTGATGAACAATATTCATTATCTAGTGCGCAAAGTGAAGGACTCAGATCTTAGAGCGCTCTTGGGAGATGATTGGGTTCGTAAACGCCGTGGTCAAGTACGACAGTATGCTACGGGATACCTCAGAGCCTCTTGGAGCAAAGCCTTGTCTTGTTTGAAGGATGAAGGCATCGGAGGGAGCTCTAATAATGCATCAAGGGTGGCTTTGAAGGAGAGGTTCAAGAATTTCAACGCATGTTTTGAAGATATATACAGGGTTCAGACAGCTTGGAAGGTACCTGATGATCAGCTTCGTGAAGAGATGCGGATAAATATATCAGAGAAGGTGATTCCTGCATACCGCTCATTTATGGGGAGATTTAGCGGTCAACTGGAGGGAAGACATGCAGGCAAATACATTAAGTATATACCCGAGGATCTAGAGACTTATTTATTAGATTTATTTGAAGGATCCCCTGCTGTACTGCATCACATAAAGAGAAAGAGTTAG 2019 0.4453 MAATTTTSLGGATGGGDDRVLATAQQILKSLKAPKEDREDMLLIFSTFDNRLSGITDLINGDDSKSSDGADDDDEDLDRFEAAEKVILVDASTYTEPSRQSTSLFDPPNDPVEYFTAVDEIIQWMEHFTIAPPHQSSGKTGQIILDRAENAIQLAMSRLEDELSHVLICNTVPPDSVSRCSTNRRNSLSFSVHDGAIDDNSSSFGDVSGPDSHRFHERGVSLGDDLFVDLVRPESIMNLKDIIDRMIRSGYEMECLQVYSSVRRDALVECLAILGVEKMSIEEVQKVEWKSLDEKMKNWVQAVKVVFGVLLSGEKRLCDSLFGDLDDLKEMCFNKTAKGCVMMLLNFGEAVSICKRSPEKLFRILDMYEALRDGLPDLEDMVTEEFVITEAKGVLRGLGEAAKGTFSEFESCIRNETSRKPVLTGDVHPLPRYVMNYLKLLVDYGDAMDSLLQISEEALYRFTNDLGGDGSQLEALSPLGRQILLLMSELEYNLDEKSKLYEDSALQQVFLMNNIHYLVRKVKDSDLRALLGDDWVRKRRGQVRQYATGYLRASWSKALSCLKDEGIGGSSNNASRVALKERFKNFNACFEDIYRVQTAWKVPDDQLREEMRINISEKVIPAYRSFMGRFSGQLEGRHAGKYIKYIPEDLETYLLDLFEGSPAVLHHIKRKS 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03006 672 PANTHER EXOCYST COMPLEX PROTEIN EXO70 79 660 IPR004140 GO:0000145|GO:0006887
Trre16g03006 672 SUPERFAMILY Cullin repeat-like 108 659 IPR016159 -
Trre16g03006 672 Pfam Exo70 exocyst complex subunit 297 655 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre16g03006 672 Gene3D Exocyst complex component Exo70 96 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03006 Trre-Chr16 25861468 25863486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03006 18 672 EXO70 exocyst subunit family AT5G50380 56.515 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03006 K07195 - gmx:100809716 1066.6