Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03000 ATGGAGTCTCCCTCCGGTGCGCATTTCTACCGCTGGCACCCTTCATCCTCCTCTTCTTCTTCTCCAACAGAGATACCCTCTCCTAACATCTTCATCATCGGAGTCTCTGGAGGTACTGCATCCGGGAAAACTACTGTGTGTGATATGATTATTCAACAACTGCAAGATCACAGAGTTGTTCTCGTCAATCAGGATTCTTTCTATCGTGGTTTAACAAATGATGAGTGCAAACGCGTTCACGAGTATAATTTTGATCATCCTGATGCATTTGATACAGAGCAACTTGTAGAAACACTCATCAAGCTTAAATCTGGACAGTCAGTTCAGGTTCCTATTTATGATTTTAAGCTTCACCAAAGAGCTTCTGACAGACACCGACAGGTCAATGCATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAACAGCGTGTCCGCGACATGATGAATATGAAGATATTTGTTGATGCAGATCCGGATGTAAGGCTTGGCCGCAGAATAAAACGAGATACTGTTGAGAGGGGTAGAGATGTGCACTCTTACGCTAAATTTGTTAAGCCCGCCTTCGATGATTTTATTCTTCCGACCAAAAAGTATGCGGACATAATCATACCTCGTGGGGGAGATAATCATGTAGCAATTGACTTGATCGTTCAACATATCCGCACTAAGCTTGGGCAGCATAACCTCTGTAAGATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATCCGTGATAAGGAAATATCAAAGCATGACTTTGTTTTTTATTCAGATAGGCTAATTCGTTTGGTAGTGGAACACGGTCTCGGTTACTTGCCATTTACAGAGAAACAAGTTACCACACCTACAGGATCAATTTATATTGGAGTTGATTTTTGTAAGAAATTGTGTGGAGTATCTGTTATTAGAAGTGGTGAAAGCATGGAAAATGCTCTGCGTGCATGCTGTAAAGGAATAAAAATAGGAAAAATTCTCATCCATCGAGAACGTGATGAAACCCAGCTTATTTATGAGAAGCTCCCTAAAGATATTTCAGAGAGACATGTTCTTCTCATGGATCCAGTACTTGGTACAGGCAACACTGCCAGCCAAGCAATAGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCACGGATAATTTTCCTCAATCTAGTCTCTGCTCCTGAGGGAATACATTATGTATGTAAACGTTTTTCGCAACTGAAAGTTGTCACTTCCGAGATTGAAGAAGGACTAAATGACCAGTTCCGTGTTGTTCCTGGGTTAGGAGAATTTGGTGACCGGTATTTTGGTACAGACGACTCCTAA 1344 0.4107 MESPSGAHFYRWHPSSSSSSSPTEIPSPNIFIIGVSGGTASGKTTVCDMIIQQLQDHRVVLVNQDSFYRGLTNDECKRVHEYNFDHPDAFDTEQLVETLIKLKSGQSVQVPIYDFKLHQRASDRHRQVNASDVIIMEGILVFHEQRVRDMMNMKIFVDADPDVRLGRRIKRDTVERGRDVHSYAKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDKEISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVTTPTGSIYIGVDFCKKLCGVSVIRSGESMENALRACCKGIKIGKILIHRERDETQLIYEKLPKDISERHVLLMDPVLGTGNTASQAIELLIKKGVPESRIIFLNLVSAPEGIHYVCKRFSQLKVVTSEIEEGLNDQFRVVPGLGEFGDRYFGTDDS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03000 447 CDD PRTases_typeI 299 406 IPR000836 -
Trre16g03000 447 ProSiteProfiles UvrC family, homology region profile. 118 215 IPR001162 GO:0009381
Trre16g03000 447 MobiDBLite consensus disorder prediction 10 24 - -
Trre16g03000 447 Pfam Phosphoribulokinase / Uridine kinase family 32 214 IPR006083 GO:0005524|GO:0016301
Trre16g03000 447 NCBIfam uridine kinase 29 226 IPR000764 -
Trre16g03000 447 MobiDBLite consensus disorder prediction 1 24 - -
Trre16g03000 447 Gene3D - 230 444 IPR029057 -
Trre16g03000 447 FunFam Uridine kinase 230 444 - -
Trre16g03000 447 Gene3D - 27 229 IPR027417 -
Trre16g03000 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 219 IPR027417 -
Trre16g03000 447 Pfam Uracil phosphoribosyltransferase 244 444 - -
Trre16g03000 447 FunFam Uridine kinase 27 229 - -
Trre16g03000 447 PRINTS Uridine kinase signature 60 71 - -
Trre16g03000 447 PRINTS Uridine kinase signature 176 187 - -
Trre16g03000 447 PRINTS Uridine kinase signature 162 172 - -
Trre16g03000 447 PRINTS Uridine kinase signature 105 120 - -
Trre16g03000 447 PRINTS Uridine kinase signature 30 47 - -
Trre16g03000 447 CDD UMPK 32 226 IPR000764 -
Trre16g03000 447 PANTHER URIDINE KINASE 27 355 - -
Trre16g03000 447 SUPERFAMILY PRTase-like 229 445 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03000 Trre-Chr16 25820314 25825792 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03000 31 446 PRT Gene Family AT5G40870 82.185 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03000 K00876 - gmx:100816209 780.4