Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02984 ATGGCGGCAGGGAGACAAAGTGTTTTAGGGAAAAGAGAATCTTACAAACACGGTTCTGTCAAGGAATTTGATTACTGTAAGAAAGATTCTTTCGAAAAAGATGATAGAGAAGAAGGTGAGATCCTTGTTGATGGGGATGAAGCCTTTTCTCCTCCAGAAAAGAGAAGAAAATTCTCACCTATTGTATGGGATATGGCTGAGAAGAAAGGGAAGGTTTCTTCCAAAGATAGGGTCACACATGTTGCCGAGTCTCTAACTCATTCATCTGCTAGTCCTGGAGGCAATGGGTCTTCGATGAATTCCTCTTGTGTGGATGAAGAAAGTGATCTGCAGGGATGGAATATCACAAAGTCAAAGTGGGCTTCTGATGATTTTTCACCGATCAGTGATGATGTTAAGTACAAGCAACACAAAAGAAGCTCAAGTTCAGAAGTTGGTGGTTCTTCCGGTAGCACGATTACTAGATCTGATGTTGACGAAGAGGATAGTGATTCTCCATCAGATTCTTTTGAAAATAGTGGTGAGAAGCATATGCAGAGAAATTTTAACATGTGTCAGAGTTGCAGAAGTGTGTCCGAGTTTGAAATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAATGATAAGAAGACTGGAGAAATTGTAGCACTTAAGAAGGTGAAGATGGAAATGGAGAGGGATGGCTTTCCAATGACAGCCCTGAGAGAAATGAATATTCTCTTGTCTTTAGACCATCCTTCTATTGTGGATGTTAAAGAAGTTGTCGTCGATGATGATGACTGCGATGATGGTACTTATATGGTAATGGAACATATGCAATACGATCTCAAACAATTGATGGAGGCAAAGACACAGCCTTTTAGTATGGGCGAAATTAAATCTTTCATGAAGCAACTTCTTGAAGGAGTCAAGTATCTTCACGATAACTGGATTCTTCATAGGGATTTGAAGACATCTAACATTCTGTTGAATAAAGATGGTCATCTGAAAATATGTGACTTTGGAATGTCAAGGCAGTATGGAAGCCCTCTGAAGCAATATACTTCTCTTGTGGTTACACTGTGGTACAGAGCACCTGAACTTTTGTTGGGAGCTAAAAAATACTCCAAAGCAATTGATATGTGGTCAGTGGGTTGTATAATGGCCGAATTACTTTCAAAGGAGCCACTTTTCAAGGGTAAAACAGAAATCGAACAACTTGACAAGATTTTTCGAACCCTTGGTACACCAGATGAGAAAATATGGCCAGGATTATCCAAATTGCCTGGATCTAAAGCAAATTTTGTTAAGCAACGGTGTAGTATGCTAAGGATGAAGTTTCCAGCTGCATCTTTCACTGGGTTGCCAGTTTTATCTGAGTCGGGGTTTGACTTGTTGAATAAGCTTCTAGCATATGATCCTGAAAAGAGGATATCTGCTGAAGCTGCTCTGCAACATGATTGGTTTCATGAAGGTCCACTTCCCCGATCTGATTTCAATCCAATTTTTTCCTCGTGGTAG 1515 0.3974 MAAGRQSVLGKRESYKHGSVKEFDYCKKDSFEKDDREEGEILVDGDEAFSPPEKRRKFSPIVWDMAEKKGKVSSKDRVTHVAESLTHSSASPGGNGSSMNSSCVDEESDLQGWNITKSKWASDDFSPISDDVKYKQHKRSSSSEVGGSSGSTITRSDVDEEDSDSPSDSFENSGEKHMQRNFNMCQSCRSVSEFEMIKKINEGTYGVVYKANDKKTGEIVALKKVKMEMERDGFPMTALREMNILLSLDHPSIVDVKEVVVDDDDCDDGTYMVMEHMQYDLKQLMEAKTQPFSMGEIKSFMKQLLEGVKYLHDNWILHRDLKTSNILLNKDGHLKICDFGMSRQYGSPLKQYTSLVVTLWYRAPELLLGAKKYSKAIDMWSVGCIMAELLSKEPLFKGKTEIEQLDKIFRTLGTPDEKIWPGLSKLPGSKANFVKQRCSMLRMKFPAASFTGLPVLSESGFDLLNKLLAYDPEKRISAEAALQHDWFHEGPLPRSDFNPIFSSW 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02984 504 ProSiteProfiles Protein kinase domain profile. 194 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02984 504 SMART serkin_6 194 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02984 504 CDD STKc_CDC2L1 188 487 IPR045267 GO:0004674|GO:0005524|GO:0006468
Trre16g02984 504 PANTHER CELL DIVISION PROTEIN KINASE 192 493 - -
Trre16g02984 504 MobiDBLite consensus disorder prediction 133 175 - -
Trre16g02984 504 Gene3D Phosphorylase Kinase; domain 1 177 278 - -
Trre16g02984 504 MobiDBLite consensus disorder prediction 83 107 - -
Trre16g02984 504 FunFam cyclin-dependent kinase G-2 isoform X1 179 278 - -
Trre16g02984 504 MobiDBLite consensus disorder prediction 35 107 - -
Trre16g02984 504 MobiDBLite consensus disorder prediction 47 82 - -
Trre16g02984 504 Pfam Protein kinase domain 194 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02984 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Trre16g02984 504 FunFam Cyclin-dependent kinase G-2 279 504 - -
Trre16g02984 504 SUPERFAMILY Protein kinase-like (PK-like) 186 492 IPR011009 -
Trre16g02984 504 Gene3D Transferase(Phosphotransferase) domain 1 279 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02984 Trre-Chr16 25683876 25685794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02984 189 493 Core Cell Cycle Gene Families AT5G10270 47.484 4.16e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Trre16g02984 Pkinase 1.3e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02984 K08818 - gmx:100788840 623.624