Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02976 ATGGAAGACTATGAGGTTGATTTTTCTGGTGATGGTTTTGCTGGGTTAGTGTCTGTTAAGTTGGATAATGGAGAGGGACCGTTTGAAGTTAGAGTCTTGAAGAAATGGGCTCTTCGTGAGTATTGTTCTTCCGGAAAGTTGGGTGATGTTGCTATGGTTTTAATTGATAAAAATTGCCATAAAATTCAAGCAACTATTCCCAACAGTTTGTTGGCTGCGTTTGATGGAGAAATTCATGAGGGAAGAGTCTATCAGATGTCATCCTTTACTGTGAGATACAACTTTGGGTATTTGGTTCCTTGCTATCATGTGTTTAGCCTTATTTTTAATGATAATACCAAGGTATGTGCTTCTACCAACTCATTCATTCCAAGCTTTGGGTTCTCTTTGATCACTACTGATAGTGTGTTGGAGAAAAGGAGAAGTTATAAATATATGGTTGATGTCATTGGGGTTGCTACACATGTCAAACATGACAAAAAAATTTATCCTGATGGAAAAGTCACTAGATCTGTGACATTTAAGATGAATGATGAAAGGAGTGCATTTTACTGTGAGTTGGTTGGTGATCTTGTTGATGATTTCCACAAGAAGGTGATGTCTTTTAAGGATGGACTACCCATTGTGGTTTTGCAATTTGTTCGTGTCACTTACCTTCAAGGTGCTGTTATGGTTCAAGGGGTTGATGAAGTAACAAAGGTATTTGTTAACCCATGGACTGCTGGAGTGGTGGATTTTAGGAAACGGTTGATTCGATATTTGAGTGAAAGTTCTAATTATGGTGGTCTTATTCGTCGATCAGCTCTTTTGCCCTTCTCAAGAAATCTAGAATTTATCAAGAAGTATCCTATTAAGACTATTTTTGAGTTGAAAAACAATCCTACTCTTGGCACATTTATCATAAGTGCTAGGATGCTTGATATAGTTAGGCTTGATCCTTGGTGGTATCCCATATGTGATTGCCCTGAAATCTTTGAGAATTATATTGGAGCTTTTCATTGTTCCAAGTGTCGTGCTTCTAAGTACATTGTGGCTCCAAAGGTTAGGCTAACTATTGAGGTGGAGGATATAACTGGGTATATTGTTTTTAATGCATTTGATCATGTCATGGTTGATGTTGTTGTCGTTGATCCCCGTGCTAAGGCTATTAATACTAATCAATTTTATGAGGCCTTTTGGCCAGTTATGGGTAGAAGTATGATGTTTATTGTGAAGAAGACTCACCATGAACCTAATTTTCTCAATCCTTCTTTTGAGCTGATTCGTGTGTCCAGTAGTGAAGCTGTGCTTAAGTATTTTTTTGATAAAGGTGTCCACATTGTCTCTTCCAAGGTAAAATATGTAATTGATTAA 1353 0.3732 MEDYEVDFSGDGFAGLVSVKLDNGEGPFEVRVLKKWALREYCSSGKLGDVAMVLIDKNCHKIQATIPNSLLAAFDGEIHEGRVYQMSSFTVRYNFGYLVPCYHVFSLIFNDNTKVCASTNSFIPSFGFSLITTDSVLEKRRSYKYMVDVIGVATHVKHDKKIYPDGKVTRSVTFKMNDERSAFYCELVGDLVDDFHKKVMSFKDGLPIVVLQFVRVTYLQGAVMVQGVDEVTKVFVNPWTAGVVDFRKRLIRYLSESSNYGGLIRRSALLPFSRNLEFIKKYPIKTIFELKNNPTLGTFIISARMLDIVRLDPWWYPICDCPEIFENYIGAFHCSKCRASKYIVAPKVRLTIEVEDITGYIVFNAFDHVMVDVVVVDPRAKAINTNQFYEAFWPVMGRSMMFIVKKTHHEPNFLNPSFELIRVSSSEAVLKYFFDKGVHIVSSKVKYVID 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02976 450 CDD RPA1_DBD_A_like 30 115 - -
Trre16g02976 450 Gene3D - 19 116 IPR012340 -
Trre16g02976 450 SUPERFAMILY Nucleic acid-binding proteins 142 249 IPR012340 -
Trre16g02976 450 Gene3D - 123 257 IPR012340 -
Trre16g02976 450 Pfam Domain of unknown function DUF223 52 139 IPR003871 -
Trre16g02976 450 CDD RPA1_DBD_B_like 148 251 - -
Trre16g02976 450 SUPERFAMILY Nucleic acid-binding proteins 282 409 IPR012340 -
Trre16g02976 450 SUPERFAMILY Nucleic acid-binding proteins 30 117 IPR012340 -
Trre16g02976 450 Gene3D - 277 429 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02976 Trre-Chr16 25564531 25566639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02976 16 412 Core DNA Replication Machinery Family AT5G08020 20.853 1.38e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02976 - - tpra:123914763 477.633