Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02975 ATGGAAGACTATGAGGTTGATTTTTCTGGTGATGGTTTTGCTGGGTTAGTGTCTGTTAAGTTGGATAATGGAGAGGGACCGTTTGAAGTTAGAGTCTTGAAGAAATGGGCTCTTCGTGAGTATTGTTCTTCCGGAAAGTTGGGTGATGTTGCTATGGTTTTAATTGATAAAAATTGCCATAAAATTCAAGCAACTATTCCCAACAGTTTGTTGGCTGCGTTTGATGGAGAAATTCATGAGGGAAGAGTCTATCAGATGTCATCCTTTACTGTATGTGCTTCTACCAACTCATTCATTCCAAGCTTTGGGTTCTCTTTGATCACTACTGATAGTGTGTTGGAGAAAAGGAGAAGTTATAAATATATGGTTGATGTCATTGGGGTTGCTACACATGTCAAACATGACAAAAAAATTTATCCTGATGGAAAAGTCACTAGATCTGTGACATTTAAGATGAATGATGAAAGGAGTGCATTTTACTGTGAGTTGGTTGGTGATCTTGTTGATGATTTCCACAAGAAGGTGATGTCTTTTAAGGATGGACTACCCATTGTGGTTTTGCAATTTGTTCGTGTCACTTACCTTCAAGGTGCTGTTATGGTTCAAGGGGTTGATGAAGTAACAAAGGTATTTGTTAACCCATGGACTGCTGGAGTGGTGGATTTTAGGAAACGGTTGATTCGATATTTGAGTGAAAGTTCTAATTATGGTGGTCTTATTCGTCGATCAGCTCTTTTGCCCTTCTCAAGAAATCTAGAATTTATCAAGAAGTATCCTATTAAGACTATTTTTGAGTTGAAAAACAATCCTACTCTTGGCACATTTATCATAAGTGCTAGGATGCTTGATATAGTTAGGCTTGATCCTTGGTGGTATCCCATATGTGATTGCCCTGAAATCTTTGAGAATTATATTGGAGCTTTTCATTGTTCCAAGTGTCGTGCTTCTAAGTACATTGTGGCTCCAAAGGTTAGGCTAACTATTGAGGTGGAGGATATAACTGGGTATATTGTTTTTAATGCATTTGATCATGTCATGGTTGATGTTGTTGTCGTTGATCCCCGTGCTAAGGCTATTAATACTAATCAATTTTATGAGGCCTTTTGGCCAGTTATGGGTAGAAGTATGATGTTTATTGTGAAGAAGACTCACCATGAACCTAATTTTCTCAATCCTTCTTTTGAGCTGATTCGTGTGTCCAGTAGTGAAGCTGTGCTTAAGTATTTTTTTGATAAAGGTGTCCACATTGTCTCTTCCAAGGTAAAATATGTAATTGATTAA 1281 0.3755 MEDYEVDFSGDGFAGLVSVKLDNGEGPFEVRVLKKWALREYCSSGKLGDVAMVLIDKNCHKIQATIPNSLLAAFDGEIHEGRVYQMSSFTVCASTNSFIPSFGFSLITTDSVLEKRRSYKYMVDVIGVATHVKHDKKIYPDGKVTRSVTFKMNDERSAFYCELVGDLVDDFHKKVMSFKDGLPIVVLQFVRVTYLQGAVMVQGVDEVTKVFVNPWTAGVVDFRKRLIRYLSESSNYGGLIRRSALLPFSRNLEFIKKYPIKTIFELKNNPTLGTFIISARMLDIVRLDPWWYPICDCPEIFENYIGAFHCSKCRASKYIVAPKVRLTIEVEDITGYIVFNAFDHVMVDVVVVDPRAKAINTNQFYEAFWPVMGRSMMFIVKKTHHEPNFLNPSFELIRVSSSEAVLKYFFDKGVHIVSSKVKYVID 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02975 426 Gene3D - 253 405 IPR012340 -
Trre16g02975 426 CDD RPA1_DBD_B_like 124 227 - -
Trre16g02975 426 Gene3D - 18 101 IPR012340 -
Trre16g02975 426 SUPERFAMILY Nucleic acid-binding proteins 258 385 IPR012340 -
Trre16g02975 426 Gene3D - 102 233 IPR012340 -
Trre16g02975 426 SUPERFAMILY Nucleic acid-binding proteins 118 224 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02975 Trre-Chr16 25564531 25566639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02975 16 388 Core DNA Replication Machinery Family AT5G08020 20.379 2.40e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02975 - - tpra:123914763 444.121