Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02971 ATGTCCCCTAACCTTTATTATACTACTAATACCTTCAAAGGTGAAGTAGATTATAACAATGATGAAAATCCATTAATGGGTTGTTATGCATCTTTATATCCTAATATGCCTATTTTGGAAAACAGTGCTAATTCATCATGGATTATTCCATTTTCTGATGAAAGTGAAACCATTAGGGATCACAAGAAATTGAAAAGATCAACAATAACTATCCCTATTTTGTTTGCAAATATCAGCAACCATAACTCAAACAGCATCAATACTTTCTTCAAAAACAGCATCAAAAGCAGTGTGAATAGCATACCAAGGCTTCATTTTAGAGATCACATAAGAACTTATAAGCAAAGATATTTTGCTGCTGAAGCTGTTGAAGAAGCAGCTGAAGAACATTTCAACTATAATAATTCTGAAGCTGAAGAAGAAGATGGAACATGTGCTGATGGAATGAGATTAGTTCAACTTTTGATTGCTTGTGCTGAAGCTGTAGCGTGTCGCGACAAATCGCACGCTTCGGTTTTATTATCTGAACTTAAATCAAATGCTTTGGTGTTTGGATCATCATTCCAAAGAGTTGCTTCTTGTTTTGTTCAAGGATTAACAGAGAGACTAACTCTGATTCAACCAATTGGTAATAATTCTGTTGGATCAGATACAAAATCAATGATGAACATAATGGATGCTGCATCAGAAGAAATGGAAGAAGCATTCAAATTGGTTTATGAGATATGTCCACATCTTCAATTTGGACATTTTGTGGCTAATTCCATAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTTGACTTAGGCATGAGTCTAGGTCTACCACACGGACACCAATGGCGAGGACTCATTCAAAGTCTCGCAAATCGATCCGGTAGTCAACGTGTTCTTCGTCGGCTTAGGATCACAGCGGTTGGTCTATGCATTGCTAGAATCCAAGTCATTGGTGAAGAACTCTCAATTTACGCGAAAAATTTAGGGGTTCATTTGGAATTCTCAATTGTTGAGAAGAATTTGGAGAATTTGAAACCTGAAGACATAAAAGTGAATGAAAAAGAGGTTCTTGTGGTTAACAGCATTCTTCAATTGCATTGTGTTGTTAAAGAGAGTCGTGGCGCTTTGAATTCGGTTTTACAAATGGTACATGGTCTTTCGCCGAAAGTTTTGGTGATGGTTGAACAAGATTCAGGTCACAATGGACCTTTCTTTCTTGGAAGGTTTATGGAATCATTGCATTACTATTCTGCTATTTTTGACTCATTGGATGCTATGCTACCAAAATATGATACCAAAAGAGCAAAAATGGAACAGTTTTATTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAAGGACCATTGAGGATGGAAAGGCATGAAAAAGTTGATCAATGGAGGAGAAGAATGAGTAGGGCTGGATTTCAAGGCGCGCCGATTAAGATGGTGGTTCAAGCTAAGCAATGGCTTTTGAAGAATAAGATTTGTGATGGATATACTGTTGTTGAAGAGAAAGGTTGCTTGGTTCTTGGATGGAAATCAAAGCCAATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1587 0.3724 MSPNLYYTTNTFKGEVDYNNDENPLMGCYASLYPNMPILENSANSSWIIPFSDESETIRDHKKLKRSTITIPILFANISNHNSNSINTFFKNSIKSSVNSIPRLHFRDHIRTYKQRYFAAEAVEEAAEEHFNYNNSEAEEEDGTCADGMRLVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLTERLTLIQPIGNNSVGSDTKSMMNIMDAASEEMEEAFKLVYEICPHLQFGHFVANSIILEAFEGESFVHVVDLGMSLGLPHGHQWRGLIQSLANRSGSQRVLRRLRITAVGLCIARIQVIGEELSIYAKNLGVHLEFSIVEKNLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALNSVLQMVHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGAPIKMVVQAKQWLLKNKICDGYTVVEEKGCLVLGWKSKPIVAVSCWKC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02971 528 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 124 522 IPR005202 -
Trre16g02971 528 Pfam GRAS domain family 151 527 IPR005202 -
Trre16g02971 528 ProSiteProfiles GRAS family profile. 142 527 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02971 Trre-Chr16 25484443 25486029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02971 148 527 GRAS Transcription Factor Family AT1G66350 37.500 2.95e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre16g02971 GRAS 6.8e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02971 - - gmx:100815959 744.577