Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02960 ATGAAGAAGGTGACAGTAATTGTGTCCATTTTTCTGTTCTCAGTACTCTCTTTTCAACAATCCCTACACGTTTCATCCTCGCCTCTCTTACACCAAAATCAGGTTTACGAGGAATCGTCTGATGGAAGTAGAAATCAAAAACAGGAGCAAGAGCGTGCTCCTGAAGTGCGTTGCTCCAGAGAGAGAAGTAGGGCTGCTTGGAAAATAATAGAGGAGTATTTGACACCATTTGTGGAGAAAGAAAACTATCAGTTGTCAAGAAAGTGCAGACTTCATTTTGAGAATGATATGTTTAGGGATCAAGAAGAGCATAAAATTTACCTTGACAGGAATGAATGGCAGTGTGGATATTGCAAGAAAAGCTTCCGTGAAGAAAAATTTATTGATCAGCATTTAGATAACAGGCACTACAATCTTCTGGATCTGAGTCATGGAAAATGCTTGGCTGATCTATGTGGGGCATTGCATTGTGATGCTGTAATGAATTCCAAGTCCTCTAGAAGCAAGTGTAATCCAGCAGCTGCTGCAAGAAACCGTCACCTATGTGAGAGTCTTGCTGACAATTGTTTTCCTATAAGCGAGGGTCCATCAGCGAGCCGTCTTCACGAATTGTTTCTGCACCAATTTTGTGATGCTCACATCTGCTCAGGGAAACATAAACCCTTCTCTAGAGGAGGCAAGGATCAAGGAAGTTTCTTTCGCCTGGCTGCTGGAGCATTGATCTTGGTGCTACTTCCTGTGTTCTATCTCTTTCTTTATTTGATACAGAGTGATATGAAGGGTCGAAATCAAGAGCTTCGTCGCATCTCCAAAGCTGGATGGAAAGTAAAGCCATCATGA 840 0.4214 MKKVTVIVSIFLFSVLSFQQSLHVSSSPLLHQNQVYEESSDGSRNQKQEQERAPEVRCSRERSRAAWKIIEEYLTPFVEKENYQLSRKCRLHFENDMFRDQEEHKIYLDRNEWQCGYCKKSFREEKFIDQHLDNRHYNLLDLSHGKCLADLCGALHCDAVMNSKSSRSKCNPAAAARNRHLCESLADNCFPISEGPSASRLHELFLHQFCDAHICSGKHKPFSRGGKDQGSFFRLAAGALILVLLPVFYLFLYLIQSDMKGRNQELRRISKAGWKVKPS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02960 279 ProSitePatterns Zinc finger C2H2 type domain signature. 115 136 IPR013087 -
Trre16g02960 279 PANTHER ZINC FINGER PROTEIN-RELATED 7 278 - -
Trre16g02960 279 MobiDBLite consensus disorder prediction 35 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02960 Trre-Chr16 25417710 25421212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02960 38 279 C2H2 Transcription Factor Family AT5G63280 60.656 1.29e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02960 - - gmx:100780668 458.759