Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02957 ATGGAGCATTCTGAAACCGATTTAGCTCCTCTTTCCAACGGGGTACAACCCCAACAAGTTTCTGACAAAGATTCTTCTTCTCCTTTTGTTGATCATTCTCCACCGTCAGATCTCAATCAAACGGCTGAGAATGATAATGATCATGATGCACTCGCTGTCGAGCTTCATGATAAGTTGGATTTGAAGGCTCAAGATGAAAGGGTTGTTGAAACTGATGATAAAGTTTCGAACTTTAACGATGTTGGAGAAGTTTCCGTTGAAGAAGAATCTGTTAAGGGTGAAGTAGTAGTAGAAGAAGAAGAATCTGTTAAGGGTGAAAATGAAGAGGAATCTGTTAAAGGTGAAGTAGATGAAGAAGAAGAATCTGTTAAGGATGAAGTAGAAGAAGAATTTGTCAAGGGTGAAGAAGGGTTTGATGGAGATAGCAAGGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATGCTGATGGTTATGATTATGGTGGTGGTGGGTATGGTGATGTTTATGGCTATGGTGATGCTGATGGAGTTGAAGACAAGGAAGAGAAAAGTGGTGATGGGACCCACCAGTTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCCTTTTATATGAAGACTGGTAATTGCAAGTTTGGATTCAACTGCAGATTTAATCACCCTATTAGGAGGAAAAACCAGGCTGTTATTAGGGAGAAGGTGCGAGAAAGAGAAGAACCGGCAGAAAACCCAGGCCAGACGGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAGAGGGTTCACAGCACCAATTTCAGAACTTAACTTTCTTGGCTTACCTATTCGTCTGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGTAGGTTTAATCATCCCGATCCTACAACTGTGGGAGGAGGTGATCCTCAATCAGGGTTTGGTAATGGAGGGTCCACTGCTCTAAGAGGTGTATCACAGCAATCTTCTTCATCATGGTCTTCTTCAAGAAAGTTAAATGAAACACCTTTTGTGCCAATGGTGATTACGCCTACTCAAGGACTTGCTCCCCAAAGTCCTGATTGGAATGGATATCAGGCACCTGGCTACTTACCTGAGAGGGTCATGCATCCATCTTCTACATATGCGATGAACAACCCAACAATTGAAACAAATGCTTACATGCACCATCAAAAGCAGATGCCAATTGAAGTTTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTTCTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAGTTTCACCATCCAAAGAATCGGGTTGCAAGATTGCCTCCTTGTATCCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAGATTTGACCACCCAGAAAGTGCACTTCCCTTAATGATGCCTGGACTCGGACAGCAATCCTATGCAAACTCGGCTAATGCTCAGGTGGCTGGGATGGGTGGAAGTGCAAGTGATGCGACAATTCAGCAATCTGTGTAA 1629 0.4328 MEHSETDLAPLSNGVQPQQVSDKDSSSPFVDHSPPSDLNQTAENDNDHDALAVELHDKLDLKAQDERVVETDDKVSNFNDVGEVSVEEESVKGEVVVEEEESVKGENEEESVKGEVDEEEESVKDEVEEEFVKGEEGFDGDSKGWDTNSWNENVNEELGGGRDADGYDYGGGGYGDVYGYGDADGVEDKEEKSGDGTHQFPLRPEAEDCSFYMKTGNCKFGFNCRFNHPIRRKNQAVIREKVREREEPAENPGQTECKYYQRSGGCKFGKACKFNHTRGFTAPISELNFLGLPIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGGDPQSGFGNGGSTALRGVSQQSSSSWSSSRKLNETPFVPMVITPTQGLAPQSPDWNGYQAPGYLPERVMHPSSTYAMNNPTIETNAYMHHQKQMPIEVFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVARLPPCILSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSYANSANAQVAGMGGSASDATIQQSV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02957 542 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Trre16g02957 542 ProSiteProfiles Zinc finger C3H1-type profile. 476 504 IPR000571 GO:0046872
Trre16g02957 542 MobiDBLite consensus disorder prediction 323 359 - -
Trre16g02957 542 SUPERFAMILY CCCH zinc finger 477 506 IPR036855 GO:0046872
Trre16g02957 542 ProSiteProfiles Zinc finger C3H1-type profile. 430 458 IPR000571 GO:0046872
Trre16g02957 542 MobiDBLite consensus disorder prediction 85 111 - -
Trre16g02957 542 SUPERFAMILY CCCH zinc finger 204 231 IPR036855 GO:0046872
Trre16g02957 542 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Trre16g02957 542 SUPERFAMILY CCCH zinc finger 434 459 IPR036855 GO:0046872
Trre16g02957 542 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 207 229 IPR000571 GO:0046872
Trre16g02957 542 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 321 IPR000571 GO:0046872
Trre16g02957 542 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 276 IPR000571 GO:0046872
Trre16g02957 542 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 457 IPR000571 GO:0046872
Trre16g02957 542 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 478 503 IPR000571 GO:0046872
Trre16g02957 542 MobiDBLite consensus disorder prediction 127 142 - -
Trre16g02957 542 Gene3D - 247 328 - -
Trre16g02957 542 Gene3D - 181 244 - -
Trre16g02957 542 PANTHER PROTEIN PHOSPHATASE RELATED 61 521 - -
Trre16g02957 542 MobiDBLite consensus disorder prediction 73 148 - -
Trre16g02957 542 SMART c3hfinal6 251 278 IPR000571 GO:0046872
Trre16g02957 542 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Trre16g02957 542 SMART c3hfinal6 430 457 IPR000571 GO:0046872
Trre16g02957 542 SMART c3hfinal6 476 503 IPR000571 GO:0046872
Trre16g02957 542 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Trre16g02957 542 SUPERFAMILY CCCH zinc finger 296 322 IPR036855 GO:0046872
Trre16g02957 542 ProSiteProfiles Zinc finger C3H1-type profile. 251 279 IPR000571 GO:0046872
Trre16g02957 542 MobiDBLite consensus disorder prediction 9 41 - -
Trre16g02957 542 Gene3D - 416 506 - -
Trre16g02957 542 MobiDBLite consensus disorder prediction 330 359 - -
Trre16g02957 542 MobiDBLite consensus disorder prediction 1 50 - -
Trre16g02957 542 SUPERFAMILY CCCH zinc finger 255 278 IPR036855 GO:0046872
Trre16g02957 542 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02957 Trre-Chr16 25402371 25405806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02957 427 527 C2H2 Transcription Factor Family AT3G02830 45.098 1.97e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g02957 zf-CCCH 1.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02957 - - tpra:123882932 835.484