Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02954 ATGGCATCCAATGAGGGATTTCTGACTGAAGGACAGAGGGAGATGTTGAAGATTGCTAGTCAAAATGCGGAGATTTTGTCTTCGTCGCCTAAGTCACCTTCAGCTTTGCTTGCTGATCATCACATCAAAGCTCCTGCTGGTGGTGGTAAGGCTCAAACTGCTGGGATAGCTGTCAGGCATGTGCGGCGGTCACATTCTGGAAAGTATGGGCGTGCGAAGAAGGATGGTGCTGGTGGCAAGGGCACTTGGGGAAAATTGCTGGACACTGAAGTTGATTCTCACATAGACCGCAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAGCTTGTTGGATCTACTGTTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCCTCATAGATGAATACTTCAGTAATGGGGATGTAGATTTGGCAGCATCTGACCTAAGAGAACTTGGCTCAAGTGAATATTACCCATACTTCATTAAGCGACTTGTTTCCATGGCCATGGATAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCACTGTATGCTGATGTCATTAGTCCCACACAGATTAGGGATGGATTTTTTATGCTTCTTGAGTCTGCTGACGATCTTGCAGTGGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCTGCCTTTCTTGCCAGGGCAAGGAAGGCACTTCCAGAATCTTCCAAGGGATATCAGGTAATCCAGACTGCCGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTTGAACGACGATGGGGTGGTAGCACTCACATTACTGTTGAAGAAGTGAAGAAAAAGATTGCTGATTTACTTAGAGAATATGTTGATAGCGGTGAGACACTTGAAGCCTGTAGGTGTATACGTGAGTTGGGAGTTGCGTTCTTCCATCACGAGGTTGTGAAGAAGGCTCTGGTACTTGCCATGGAAATTCCTTCAGCAGAACCTTTACTGTTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTGATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGGCCTAGATGATCTTGCTCTTGATATTCCGTCAGCTAAAGCCTTGTTTCAGTCATTTGTCCCCAAGGCTATCTTTGAAGGATGGCTTGATGCTTCCTTTGCCAATCCAGCTGGTGAAGATGGGGAATTCCAAGTTGAAGATGAGAAAGTTAGGAAGTACAAAAAGGAAGCTGTAACTATAATTCACGAGTATTTTCTCTCTGATGACATTCCCGAACTCATTCGAAGTCTAGAAGATCTTGGAGCACCAGAGTACAACTCAATATTTTTGAAGAGGCTAATAACACTTGCTTTGGACCGAAAGAACAGAGAAAAGGAAATGGCTTCTGTCCTGCTATCTGCACTTCATATAGAGATATTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAATGCAGAAGATACAACACTGGACATACTGGATGCTTCAAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTGATTGACGATGTGCTTGCACCATTGAACTTGGACGAAATTGGAAGCAGGCTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGTATGGCTCGAACACTCTCATCTGCTCGTCATGCAGGTGAAAGGCTATTGAGATGCTGGGGCGGGGGAACTGGATGGGCTGTGGAGGATGCTAAGGACAAGATCACAAAGCTCTTGGAGGAGTACGAAAGTGGTGGGGTTGTCAGTGAAGCATGTCAGTGCATTCGGGACTTGGGGATGCCTTTCTTTAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGATGAATGATAGGTTGCTAAATCTGCTGCAGGAGTGCTTTAGTGAAGGCCTTATCACCACCAATCAGATGACTAAAGGGTTTACCCGAATTAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCGAACGCGAAGGAAAAATTTGCTCTCTATGTGGAGCATGCCCAGAGCAAGGGATGGCTTCTACCATCGTTTGATTCCTCTGCCACAGATGTCTAA 2112 0.4527 MASNEGFLTEGQREMLKIASQNAEILSSSPKSPSALLADHHIKAPAGGGKAQTAGIAVRHVRRSHSGKYGRAKKDGAGGKGTWGKLLDTEVDSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSLIDEYFSNGDVDLAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPTQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGYQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGETLEACRCIRELGVAFFHHEVVKKALVLAMEIPSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFQSFVPKAIFEGWLDASFANPAGEDGEFQVEDEKVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNSIFLKRLITLALDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLENAEDTTLDILDASNELALFLARAVIDDVLAPLNLDEIGSRLPPKCSGSETVRMARTLSSARHAGERLLRCWGGGTGWAVEDAKDKITKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKMNDRLLNLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFALYVEHAQSKGWLLPSFDSSATDV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02954 703 ProSiteProfiles MI domain profile. 122 243 IPR003891 -
Trre16g02954 703 FunFam programmed cell death protein 4 410 564 - -
Trre16g02954 703 FunFam programmed cell death protein 4 114 265 - -
Trre16g02954 703 ProSiteProfiles MI domain profile. 583 702 IPR003891 -
Trre16g02954 703 Pfam MA3 domain 422 531 IPR003891 -
Trre16g02954 703 Pfam MA3 domain 287 398 IPR003891 -
Trre16g02954 703 Pfam MA3 domain 123 234 IPR003891 -
Trre16g02954 703 Pfam MA3 domain 585 692 IPR003891 -
Trre16g02954 703 PANTHER PROGRAMMED CELL DEATH 4 3 697 IPR039778 GO:0045892
Trre16g02954 703 Coils Coil 622 642 - -
Trre16g02954 703 SUPERFAMILY ARM repeat 283 404 IPR016024 -
Trre16g02954 703 Gene3D - 411 563 - -
Trre16g02954 703 Gene3D - 115 263 - -
Trre16g02954 703 SMART ma3_7 123 234 IPR003891 -
Trre16g02954 703 SMART ma3_7 421 532 IPR003891 -
Trre16g02954 703 SMART ma3_7 584 693 IPR003891 -
Trre16g02954 703 SMART ma3_7 287 398 IPR003891 -
Trre16g02954 703 SUPERFAMILY ARM repeat 120 280 IPR016024 -
Trre16g02954 703 Gene3D - 571 700 - -
Trre16g02954 703 Gene3D - 273 405 - -
Trre16g02954 703 ProSiteProfiles MI domain profile. 286 407 IPR003891 -
Trre16g02954 703 SUPERFAMILY ARM repeat 580 698 IPR016024 -
Trre16g02954 703 ProSiteProfiles MI domain profile. 420 541 IPR003891 -
Trre16g02954 703 SUPERFAMILY ARM repeat 418 576 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02954 Trre-Chr16 25364838 25369258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02954 587 683 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 1.39e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02954 - - gmx:100809081 1217.99