Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02953 ATGGATGGTAGAAGGCATTCTGTTGATGTACCTATTTCTAAAACTCTTGTGGCACTAAGAAGAGTAAGGTCATTAAGGGATCCTTCAACAAATGGTATTAGCAATCTCTCTCCTTTGATTGATAATGAGCATTGGGAAAAAAATGGGATTTCTTTGAGGTTTCTTAATGATACTTATGCATGTGATTCTGATGATAATGGTTATTTAAGGTCAAATGATTTAGATTTTAAGGGTCATAGAGAACATGGTACTACTACTACTAAGTTTGAAAAGAATTGTTATTGTGAGGAACATCAACAAGATGATGAATTAGTTTACTCCAATGATCCTAAGCAGCAGGGTATTTTTGGGAATAAATCACCAAAAGAAAGCTGTTGTAGCAACCATGAAGCTATAGGAATGGATTTGGCTTCTATCATTCCTTATAATAATCATTTGAAGGATGAGGAATCATGCTATTTATCAACTTTATTGTCATCAAAGTTAGGGAGAATGGATTACACAAAGTCGACTAGAAAGTTTATGCGAAAGAATCAAGTGAAACCGTTTGAATTGATGCGTGATAATGGAAGTAGTGTTGAGAGTCCATGCCTTAGTGCCTCAACACATACACCTCAAGATGTTGATGTTTTAGTTGATAACAATGGATGTGGAATAAGCTGTTGTTGGTCGAAATCACCGAGGTTTAAAGACTCGAATTATTATTCTGAAATGGAAGAACTTCCGTTGATGTTGCAGCACGTTAATGAGACGGATCTTCGTGGACATAAAAGTATGAGACACAATGGTGGTGAGATTAGTCCAACATTGGAAACTCCTAGAAGTTTGTCTATGAAATTTAAGCCAAAATCTTTTGATGATTTAGTTGGACAAAATGTGGTTGGAAAGTCTCTTTTGGGTGCCATCTATAGAGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCTCGTGGCACAGGAAAGACATCTGCATCAAGGATATTTGCTGCTGCGCTGAATTGCCTCTCGTACGAGGAGAAAAAGCCGTGTGGTTGTTGTAGAGAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTTGACTCTTTGAGAATTAACCGTTCGGACAAGGCTAAATCTCTTGTTAAGAATGCATGCTCAACAAATCCAGTGTCGTCGCGTTTTAAGGTGTTCATTATTGATGAGTGCCAGTTATTGAATAAAGAAACATGGGTGATTCTTTTGAATAGCCTAGTGAGTGTTTCTCAACATGTGGTTTTTGTGATGATTACTCCTGATTTGGATAAGCTTCCACGAAGTGCGGTGTCTCGAGCTCAGAAATATCACTTTGCAAAGATTAAAGATGCCGACATTGCAAACAGATTGAAAAGAATTTGTGCTGAGGAGGGTCTTGAATCTGAACAAGATGCTTTGGACTTTATTTCTGCTAAATCATGTGGTTCTCTTCGGGATGCAGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTATGAACTTACTGGAGTAATTTCTGATGATGAATTGCTTGATTTGCTGGACCTGTCTTTGTCGTCCGACACTTCAAATACGGTTATAAGAGCTCGAGAGCTGTTGAGATCAAGGATAGATCCTTTACAGCTTATATCTCAGCTGGCGAATCTTATTATGGATATTCTTGCAGGGAAATGTGAACTTAGTGGTTCTGAAATCAGAAGAAGATTTTCTGATAAACATATTTCGGAAGCAAGCATGCATAAACTTAGTCATGCATTAAGAATACTTTCCGAAACGGAGAAGCAATTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCACTTCTACAGTTAAGCTCTATAGAATATTCATCTGTTGATGCTAATGATACCAAGTTGTGCTTGAGAGCTGCATCCAATAGAGATGGTGATCTATGCAGTACATCATCTACAGGTGAAACTTTGAAGCATCTCGCCCTCGCCACAGGTAAGTGTGACGAGAAGTCATATAAAATAGAGGTTCCGGAGGATGACAAAGCGACATTGGATTCTATATGGTATAAAGCTACTGAGATATGTGAATCTAGAAGACTCGAGGCTTTTCTCAGGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGTCTAGCAGTTGTGGAGTTGGAATTTAACCATCGTGTTTACGTAGCTAGAGCTGAAAAATCATGGAAACTAATTGCAAGTTCCCTACAGTTCATATTGGGCTGTAACATTGAGCTCAGAATCAATCACGTACCATGTACTTCAGATTCAAAGTATGCTAAATTGAAGAGGTCATCGTTCAATTTCTTTAATTGTTCGCGCAGAATTCTTCGGAAATCACTATCATCCGATGAACAAGGATGTGAATCAGACTATGCTGATTGCACTTCTCAAAAGCCTATGATGATGGACAGAACTCTATCTCGCTCCTCTGATTGCGGCTCTCGTGCGCCGCCTCTTGAATCCTACAATGGAATGGAAGTTGTAACAACTCTTAGAAGCTGCGAAGGGAATTTACTAAGCTCAGGAAAGATATTTCTGAATAGGATAGATCAAGAGACTCCGAGGATTTCGTTTTCTAGAAATGATTCTGTCAAGGAAGAAGGGTGCAATCATGAAGATCTCGCTTCATCAACTTTTGATTTAGATAATAATCGTTCTAACTGTTTACCTCGAACGCTCTGGCTTCGTAGAAAATTCGTATCTTCATATGCATCTAAACAAAAGGAATTTTGTTTTACCAATCCCCAAGTACAAATGTACTGA 2802 0.3815 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISNLSPLIDNEHWEKNGISLRFLNDTYACDSDDNGYLRSNDLDFKGHREHGTTTTKFEKNCYCEEHQQDDELVYSNDPKQQGIFGNKSPKESCCSNHEAIGMDLASIIPYNNHLKDEESCYLSTLLSSKLGRMDYTKSTRKFMRKNQVKPFELMRDNGSSVESPCLSASTHTPQDVDVLVDNNGCGISCCWSKSPRFKDSNYYSEMEELPLMLQHVNETDLRGHKSMRHNGGEISPTLETPRSLSMKFKPKSFDDLVGQNVVGKSLLGAIYRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSYEEKKPCGCCRECVLFFSGRSKDVKEVDSLRINRSDKAKSLVKNACSTNPVSSRFKVFIIDECQLLNKETWVILLNSLVSVSQHVVFVMITPDLDKLPRSAVSRAQKYHFAKIKDADIANRLKRICAEEGLESEQDALDFISAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELSGSEIRRRFSDKHISEASMHKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSIEYSSVDANDTKLCLRAASNRDGDLCSTSSTGETLKHLALATGKCDEKSYKIEVPEDDKATLDSIWYKATEICESRRLEAFLRKQGKLSSVCINQGLAVVELEFNHRVYVARAEKSWKLIASSLQFILGCNIELRINHVPCTSDSKYAKLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADCTSQKPMMMDRTLSRSSDCGSRAPPLESYNGMEVVTTLRSCEGNLLSSGKIFLNRIDQETPRISFSRNDSVKEEGCNHEDLASSTFDLDNNRSNCLPRTLWLRRKFVSSYASKQKEFCFTNPQVQMY 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02953 933 FunFam DNA polymerase III subunit gamma/tau 450 512 - -
Trre16g02953 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 499 IPR027417 -
Trre16g02953 933 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 276 672 - -
Trre16g02953 933 SUPERFAMILY post-AAA+ oligomerization domain-like 519 620 IPR008921 GO:0003677|GO:0006260
Trre16g02953 933 CDD AAA 289 440 - -
Trre16g02953 933 Gene3D - 269 447 IPR027417 -
Trre16g02953 933 CDD HLD_clamp_pol_III_gamma_tau 449 512 IPR045085 -
Trre16g02953 933 Gene3D - 512 626 - -
Trre16g02953 933 FunFam Protein STICHEL-like 1 isoform C 513 626 - -
Trre16g02953 933 Pfam DNA polymerase III, delta subunit 291 449 - -
Trre16g02953 933 Gene3D - 450 511 - -
Trre16g02953 933 NCBIfam DNA polymerase III subunit gamma/tau 275 622 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02953 Trre-Chr16 25349121 25353556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02953 266 514 Core DNA Replication Machinery Family AT1G21690 25.397 1.06e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02953 - - gmx:100819111 1135.94