Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02952 ATGAGAGGTGTAATAAACATGGAGTACTACCAGCCAATAATGATTATGGTGTTAATACAGTTTATATATTCAGGTATGACTCTAGGCACAAGAATTGGACTTTTGGAGGGTATGAGCCCAAGGGTATTTGTGGTATACCGTCATGCTTTTGCAACCATTTTTATTGCTCCCATTGCTTATTTATCTGGGAGAAATTCTGCCTCCTATTCCTTAAACTTAAGGAGTTTTTCCCTGATATTCTTGACCTCACTAATTGGTATTACGTTGAATCAAAATTTATATTTTGAGGGTCTATATTTGGTTCCTTCTTCAATTGCAAGTGCCATGACCAATCTTATTCCAGCAATCACATTTGTAATAGCATCCTTTGTAGGAATGGAGAAAGTCAATATTCAAAGTTTGAGAACTATAGCTAAAATTATGGGGACAGTGATATGTGTTAGTGGAGCAGTTTCCATTGCATTGTTAAAGGGTCCAAAACTACTAAATTCAGAAAAAATACCTTCAAAATCTACCAACAAGGACACAATCTTGACAAGTGATGATAATTGGTTGCTTGGATGTTTGTTTATTTTGGGAAGTAATGTTGCCAATTCAATTTGGATCATTTTGCAGGTTCCAGCTTATGCAAGCCATCCTAATTCTATATCACTTTCAGCTTGGATGTGTTTAATGACAACATTACAATCATTAGTAGTGACACTATTTTTGGAGCCAGACCTAAATTCGTGGAAAATTAATACTCTACTTCAATTTGGTTGCATTTTATATTCAGGGTTTATGGGGTCTGGAGTAGCATTTTTTCTCCAAGCATGGTGCATTTCAAGGAGAGGACCTCTCTTCTCTGCTATGTTTGCTCCTGTTTTCACATTATTTGTGACTGTAATGGCTGCCTTGTTGCTTCATGAAGAAATATACATCGGAAGCTTGATAGGTGCAATTGGAGTGATCATTGGTTTGTATATTGTGCTTTGGGGTAAAGCTGAAGATGTCATAGTAGTTAATGAGACACATGAAATTGTTGACAATGAATCTCGTGGAAAAACATATTCCAAAACTGATTTGAAAGAGTCTCTTTTAATAGACCAAAACTAG 1095 0.3589 MRGVINMEYYQPIMIMVLIQFIYSGMTLGTRIGLLEGMSPRVFVVYRHAFATIFIAPIAYLSGRNSASYSLNLRSFSLIFLTSLIGITLNQNLYFEGLYLVPSSIASAMTNLIPAITFVIASFVGMEKVNIQSLRTIAKIMGTVICVSGAVSIALLKGPKLLNSEKIPSKSTNKDTILTSDDNWLLGCLFILGSNVANSIWIILQVPAYASHPNSISLSAWMCLMTTLQSLVVTLFLEPDLNSWKINTLLQFGCILYSGFMGSGVAFFLQAWCISRRGPLFSAMFAPVFTLFVTVMAALLLHEEIYIGSLIGAIGVIIGLYIVLWGKAEDVIVVNETHEIVDNESRGKTYSKTDLKESLLIDQN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02952 364 Pfam EamA-like transporter family 186 324 IPR000620 GO:0016020
Trre16g02952 364 Pfam EamA-like transporter family 13 151 IPR000620 GO:0016020
Trre16g02952 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 151 - -
Trre16g02952 364 PANTHER WAT1-RELATED PROTEIN 11 331 IPR030184 GO:0016020|GO:0022857
Trre16g02952 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02952 Trre-Chr16 25339766 25344018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02952 6 360 Nodulin-like Gene Family AT4G30420 52.186 2.26e-130 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02952 - - gmx:100812331 454.907