Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02945 ATGAATAACCAAACCAAATCAATCGAGTTTCATAACACTCGTGTCTTACCCGAATATGATGTCTGTATTCATACTTCTGATGGCACACGCATTCCAGCTCACACAAGCATCCTGGCCTTGGTGTCGCCAGTTTTCGAGAATATTCTAGAACAACCGCGTAAACAGCGAAGCTCTGAAAGGATAATCAAAATCCACGGCGTTCCTTCCACCGCCGTAACCGCCTTCATCAACTTCCTTTACTCATCCAGGTGTACCGAGGATGAAATGGACAAATACGGAATCCACCTGCTTGCACTATCTCACGTGTACAACGTGCCACAATTGAAACAGAAATGCATCAAAGGCCTTGTTCAACGGTTAACCATAGAAAACGTGGTGGATGTACTCCAACTCGCGAGACTCTGCGACGCACCGGATCTCCGTCTCCGATGTATGAAACTACTCACCAATCACTTCAATGCTGTGCAAAAATCCGAAGGATGGAAGTTCCTCACCAAACATGACCCCTGGCTTGAACTCGATATCCTTCACTTCATGGACGAAAGTGAAACGAGGAGAGAGAAATTGAGGAGGCATAGGGAGGAGCAAGGCCTGTATGCGGAACTAAGCGAGGCGATGGAATGTTTGGAACATATATGTACAGAAGGTTGCACTGATGTTGGGCCGTATCATGTGGAGGTTGATAGAGAGAGGAAGCCATGTAGCAAATTCTCAACTTGTAAAGGTCTTCAGCTTCTGATTCGCCATTTTGCGACGTGCAAGGGGAGGGTGAAGGGAGGATGCTGGCGGTGCAAGCGAATGTGGCAGCTGTTTAGATTGCATTCATATGTTTGTCAACAAACTGATGATTCCTGCAATGTTCCTCTTTGCAGACAATTTCAATTGAAAATGGAGCAAGAGAAAAGGAAAGATGATCCCAAGTGGAAACTACTAGCAAGAAAGGTGGCCTCAGCTAAAGTCATGTTTTCCTTGTCTCTTCCTAAGAGAAAGAGAGATGAAGAAATGAGAGTGACCATAGATAATCGTGGGATAAGATGTTTTGGTTACAATGAATATTGTAACAATGTAAAAGACAATCGATGCATTTCATGTTGA 1095 0.4447 MNNQTKSIEFHNTRVLPEYDVCIHTSDGTRIPAHTSILALVSPVFENILEQPRKQRSSERIIKIHGVPSTAVTAFINFLYSSRCTEDEMDKYGIHLLALSHVYNVPQLKQKCIKGLVQRLTIENVVDVLQLARLCDAPDLRLRCMKLLTNHFNAVQKSEGWKFLTKHDPWLELDILHFMDESETRREKLRRHREEQGLYAELSEAMECLEHICTEGCTDVGPYHVEVDRERKPCSKFSTCKGLQLLIRHFATCKGRVKGGCWRCKRMWQLFRLHSYVCQQTDDSCNVPLCRQFQLKMEQEKRKDDPKWKLLARKVASAKVMFSLSLPKRKRDEEMRVTIDNRGIRCFGYNEYCNNVKDNRCISC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02945 364 SMART TAZ_2 196 291 IPR000197 -
Trre16g02945 364 Gene3D TAZ domain 194 319 IPR035898 -
Trre16g02945 364 Pfam TAZ zinc finger 203 290 IPR000197 -
Trre16g02945 364 SUPERFAMILY TAZ domain 194 294 IPR035898 -
Trre16g02945 364 SMART BTB_4 19 120 IPR000210 GO:0005515
Trre16g02945 364 Gene3D Potassium Channel Kv1.1; Chain A 2 120 IPR011333 -
Trre16g02945 364 Gene3D - 121 193 - -
Trre16g02945 364 FunFam BTB/POZ and TAZ domain-containing protein 2 121 191 - -
Trre16g02945 364 Pfam BTB/POZ domain 20 118 IPR000210 GO:0005515
Trre16g02945 364 FunFam BTB/POZ and TAZ domain-containing protein 2 192 319 - -
Trre16g02945 364 ProSiteProfiles BTB domain profile. 19 88 IPR000210 GO:0005515
Trre16g02945 364 SUPERFAMILY POZ domain 19 119 IPR011333 -
Trre16g02945 364 CDD BACK 121 168 - -
Trre16g02945 364 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 17 333 IPR044513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02945 Trre-Chr16 25249296 25254223 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Trre16g02945 BTB 2.5e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02945 - - cam:101496955 680.248