Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02943 ATGGCAAAATCTCGCAAATCGCAAGAAGAAATTGCGATTGAAGCAATCAATCATGCTTTGAAAGCTCTTCGGAAACGCCATTTGCTTGAAGAAGCTGCTCATGCTCCTGCAATTCTCGCACTTTCTAGACCTATCATTTCTCAGGGTTCTGAATGGAAAGAAAAAGCAGAGAACTTGGAATTGGAACTACAACAATGCTATAAAGCTCAATCTCGGTTATCGGGGCAACTTGTTGTGGAAGTAGCTGAATGCCGAGTTTCAAAAGGTTTGCTTCAAGAGAAAGAAACTGCAATTGCTGATATGCAGAAGGAGTTAACAGAATTGAGGGATGAGTGCTGTCAATTAAAGACGGATTTAGAACAAAAGGTTAAAGAAGTAGAGTTAGTTGTGAGTGAGAATTCAGAACTTAAAGCACAACTAGAGCAGATGACTACCAAAGTCAATGCAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTGGATGTTAGAAAAAATGAAGGATGCTGAACGCCTAAATGAGGCAAATGCACTGTATGAAGACATGGTTCAACGGTTAAAGGCTAGTGGTCTAGAACAACTTGCAAGGGAACAGGTGGATGGAATCGTTCGGCAAAGTGAAGAAGGTGCTGAATTCTTTTCAGAGTCAAACATCCCTTCCCATTGCAAATATAGGTTAAATGCACATGAAGGAGGCTGTGCTTCCTTATTGTTTGAGTACAATTCTAGTAAACTGATTACCGGGGGACAGGATCGTTCTGTTAAAGTGTGGGATACAAATACAGGATCCTTAAGTTCTAGTCTTAATGGTTGCCTTGGCTCAGTACTGGATCTCACTATCACCCATGATAATCGATCAGTTATTGCTGCAAGCAGCTCAAACAACTTGTATGTGTGGGATCTGAACTCAGGCCGGGTCCGTCACACCCTTACAGGACATACGGATAAAGTTTGTGCTGTTGATGTCAGCAAAGTTTCAAGTCGTCATGTTGTCAGTGCAGCTTATGACCGGACTATAAAAGTTTGGGACTTGATGAAAGGTTACTGCACAAATACAATCATGTTTCCCAGCAACTGCAATGCTCTTTGCTTCAGCGTAGATGGACAGACCATATTTTCAGGACACGTTGATGGTAATCTTCGGTTATGGGACATTCAGAGTGGAAAGCTACTAAGTGAGGTTGCTGCACATTCACTTGCCATCACGTCAATATCCCTTTCTAGAAATGGAAATATTGCATTGACTAGTGGAAGGGATAATTTGCACAATTTGTTTGATATACGATCACTGGAAGTTTGTGGCACATTACGAGCCACAGTAAACAGAGTGGCTTCTAATTGGAGTCGCTCGTGTATCAGTCCAGACAACGGTCATGTTGCAGCTGGGTCTACCGATGGATCTGTTCATATATGGTCAATTTCTAAAGGTGAAATAGTCAGTACTCTGAAGGAGCATACTTCTTCTGTTCTTTGTTGTAGTTGGAGTGGAATGGGAAAGCCCCTTGCTTCAGCTGACAGAAATGGAATTGTATCCATTTGGTCATAA 1545 0.4181 MAKSRKSQEEIAIEAINHALKALRKRHLLEEAAHAPAILALSRPIISQGSEWKEKAENLELELQQCYKAQSRLSGQLVVEVAECRVSKGLLQEKETAIADMQKELTELRDECCQLKTDLEQKVKEVELVVSENSELKAQLEQMTTKVNAAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVQRLKASGLEQLAREQVDGIVRQSEEGAEFFSESNIPSHCKYRLNAHEGGCASLLFEYNSSKLITGGQDRSVKVWDTNTGSLSSSLNGCLGSVLDLTITHDNRSVIAASSSNNLYVWDLNSGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLMKGYCTNTIMFPSNCNALCFSVDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAITSISLSRNGNIALTSGRDNLHNLFDIRSLEVCGTLRATVNRVASNWSRSCISPDNGHVAAGSTDGSVHIWSISKGEIVSTLKEHTSSVLCCSWSGMGKPLASADRNGIVSIWS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02943 514 Gene3D - 91 162 - -
Trre16g02943 514 SUPERFAMILY WD40 repeat-like 218 513 IPR036322 GO:0005515
Trre16g02943 514 Coils Coil 119 160 - -
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Trre16g02943 514 CDD Atg16_CCD 88 176 - -
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Trre16g02943 514 Gene3D - 358 448 IPR015943 GO:0005515
Trre16g02943 514 Gene3D - 449 514 IPR015943 GO:0005515
Trre16g02943 514 Gene3D - 184 357 IPR015943 GO:0005515
Trre16g02943 514 Pfam Autophagy protein 16 (ATG16) 50 173 IPR013923 -
Trre16g02943 514 CDD WD40 222 514 - -
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
Trre16g02943 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Trre16g02943 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Trre16g02943 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Trre16g02943 514 Pfam Anaphase-promoting complex subunit 4 WD40 domain 358 405 IPR024977 -
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
Trre16g02943 514 SMART ire1_9 364 395 IPR018391 -
Trre16g02943 514 SMART ire1_9 278 311 IPR018391 -
Trre16g02943 514 SMART ire1_9 450 483 IPR018391 -
Trre16g02943 514 Pfam WD domain, G-beta repeat 440 472 IPR001680 GO:0005515
Trre16g02943 514 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Trre16g02943 514 Pfam WD domain, G-beta repeat 477 514 IPR001680 GO:0005515
Trre16g02943 514 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Trre16g02943 514 FunFam Autophagy-related protein 16 isoform A 357 514 - -
Trre16g02943 514 FunFam Autophagy-related protein 16 isoform A 214 356 - -
Trre16g02943 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Trre16g02943 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Trre16g02943 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Trre16g02943 514 Coils Coil 91 111 - -
Trre16g02943 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Trre16g02943 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Trre16g02943 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Trre16g02943 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Trre16g02943 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Trre16g02943 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Trre16g02943 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Trre16g02943 514 Coils Coil 169 189 - -
Trre16g02943 514 Coils Coil 6 26 - -
Trre16g02943 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Trre16g02943 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 7 486 IPR045160 GO:0000045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02943 Trre-Chr16 25228199 25230820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02943 58 431 U-box Gene Family AT1G04510 28.312 1.05e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02943 K17890 - gmx:100778336 882.863