Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02942 ATGAATATTAATGGCTTCACCACCACTAACTTCCTCCACCTTCAACACAAACACAACCCAATCTCACTCAATTACCAATATCTCACTTCCTTCAAAACCCTATCACCTCATATCACATGTCTCGCCGTCCACCATAACCTTCTCTACGCTGCTTCTCTCAACCTCATCAACGTTTTCGAACTCTCTTCCTCTCATTACACACACATCGACACCTTCAACGAAAGCTCCGGTTCAGGTTTTGTCAAGTCCATCACCTTCAACGGTTCAAAAGTCTTCACTGCACACCAAGACTGTAAAATTCGCGTATGGCTTATCACATCTTCAAAACAACACCGTCTTATCTCTTCCCTTCCAACTGTCAAAGACCGGTTGCGCCGCGGCATTGTTCCTAAAAACTATGTAAACGTTCGGCGTCACCGGAAGAGTCTTTGGATCCAACATAATGACACTGTGTCAGGTTTAGAAGTCAACCAGAAAGAGAATCTAATGTACTCTGTTTCATGGGACAAAACTTTTAAGATTTGGGACTTATCTCCCGGTTACCGGTGTTTGGAGTCTTTTAACGGTCATGACGACGCTATCAACGCCGTTGTTGTTTCCGATAAAGGCGCCGTTTACACTGCGTCAGCTGATGGGTGTATCAAGGTTTGGAAGATGGATGATAAGGTGAAACGCTACATGTTGGTGAGTACGGTGGGGAAGCAAAAACCAGCCGTTAATGCGTTGGCATTGAACGGAAATGGTACGGTTTTGTTTTCCGGTGGGAGTGATGGTACGATTTGTTTGTGGGAGGAAAAAGAAAACGAAAACGACGTCGTGTTGATGGAAACATTAAGGGGTCATAGTGGGGCAATACTTTGTTTGGTCAATGTTGATGATTTGTTGATGAGTGGGTCAGCAGATCTGACGGTGAGGATTTGGCAGAGGGAAAAGGGGAATGGTGGGTATTATTGTAGAGCAGTGTTAGAAGGACATGAAAAACCGGTTAAGTCGTTGGTGGCGGTTTCCGGTAGTAGTCGTGGTGGTGAAGATGATGAATCTGATGGTGATGGGGTTGTGACACTGTTTAGTGGAAGCCTTGATGGGGATATTAAAGTGTGGGAAGTGTTTGGTTGGGTTTAA 1122 0.4483 MNINGFTTTNFLHLQHKHNPISLNYQYLTSFKTLSPHITCLAVHHNLLYAASLNLINVFELSSSHYTHIDTFNESSGSGFVKSITFNGSKVFTAHQDCKIRVWLITSSKQHRLISSLPTVKDRLRRGIVPKNYVNVRRHRKSLWIQHNDTVSGLEVNQKENLMYSVSWDKTFKIWDLSPGYRCLESFNGHDDAINAVVVSDKGAVYTASADGCIKVWKMDDKVKRYMLVSTVGKQKPAVNALALNGNGTVLFSGGSDGTICLWEEKENENDVVLMETLRGHSGAILCLVNVDDLLMSGSADLTVRIWQREKGNGGYYCRAVLEGHEKPVKSLVAVSGSSRGGEDDESDGDGVVTLFSGSLDGDIKVWEVFGWV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02942 373 Pfam WD domain, G-beta repeat 318 367 IPR001680 GO:0005515
Trre16g02942 373 Pfam WD domain, G-beta repeat 146 176 IPR001680 GO:0005515
Trre16g02942 373 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Trre16g02942 373 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Trre16g02942 373 Pfam WD domain, G-beta repeat 236 263 IPR001680 GO:0005515
Trre16g02942 373 ProSitePatterns Trp-Asp (WD) repeats signature. 355 369 IPR019775 -
Trre16g02942 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 308 - -
Trre16g02942 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 178 IPR001680 GO:0005515
Trre16g02942 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 178 - -
Trre16g02942 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 273 IPR001680 GO:0005515
Trre16g02942 373 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 369 IPR045182 -
Trre16g02942 373 Gene3D - 134 232 IPR015943 GO:0005515
Trre16g02942 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 220 IPR001680 GO:0005515
Trre16g02942 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 308 IPR001680 GO:0005515
Trre16g02942 373 Gene3D - 22 126 IPR015943 GO:0005515
Trre16g02942 373 SMART WD40_4 65 104 IPR001680 GO:0005515
Trre16g02942 373 SMART WD40_4 180 218 IPR001680 GO:0005515
Trre16g02942 373 SMART WD40_4 271 308 IPR001680 GO:0005515
Trre16g02942 373 SMART WD40_4 225 264 IPR001680 GO:0005515
Trre16g02942 373 SMART WD40_4 138 176 IPR001680 GO:0005515
Trre16g02942 373 SMART WD40_4 315 368 IPR001680 GO:0005515
Trre16g02942 373 SMART WD40_4 24 60 IPR001680 GO:0005515
Trre16g02942 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 220 - -
Trre16g02942 373 SUPERFAMILY WD40 repeat-like 24 370 IPR036322 GO:0005515
Trre16g02942 373 Gene3D - 234 370 IPR015943 GO:0005515
Trre16g02942 373 FunFam BnaA09g28200D protein 134 222 - -
Trre16g02942 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 264 - -
Trre16g02942 373 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Trre16g02942 373 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Trre16g02942 373 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02942 Trre-Chr16 25209816 25211254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02942 236 332 U-box Gene Family AT2G33340 32.323 2.09e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02942 - - aprc:113874855 515.383