Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02930 ATGTTCCTTTCTTCTACTTCTTCTCTCAACATTCATTCACCTACAATGTCTATCACAATGGCAACAGAATCATGGTTACTCTCGCAACCTTTTTCACTCTCGTACACCAAAACCAAATTCCCAATTATCTCAAATTATGTTAAGCCCTTCAAGCTACAAAACCCATCATCGTCATCATCATGTAATAATAATACCTCAACTCTCCCTCTCACTACTAGAAGGAGAATAACCCGCCATTCTTCTGTTCTAACATTTGCGATTGGTGCAGTTGGAAATTCTTCTCAAGATTTGAAGATTTTTGTTGGAAATTTAACTTCTGATATTAATGTTGACAAATTAACCGCGCTTTTTGGGCAGGCTGGGACTGTAGTGCATGCTGAGGTAATTTATACTTGGGATAAAGACCAAAGGTTCGGATGTATAACCATGAGTACCGTTGAAGAAGTTGAGAAGGCTGTGAACAAGTTCGACGGATATGAATTAAATGGAAAATTGTTGACGGTTAGTACTACGGATGATCCAAGAAAAGCACAACCTGATCTTCCATCACGTCCACTCGCGTTTGATTCTCCTTTTAGTGTCTATGTTCATAGCTTGACGCGGGAAATTGACAATGCTGGCTTGGAGGAAATTTTCAGCAAATATGGTAAGGTTGAGAGTGTTGAGATAGTCTGCGATAAAGTGACCGGTCGAACACGTGGTTTTGGCTTTGTTACAATGTCGAATGAGACTGATATGAAAAATGCCATTGCTGGTCTTCATAAGAAGATGGATATGGGAGACAGAAAATTGATGGTTTCTGAATTACCGCGTAATTTGTAA 822 0.3929 MFLSSTSSLNIHSPTMSITMATESWLLSQPFSLSYTKTKFPIISNYVKPFKLQNPSSSSSCNNNTSTLPLTTRRRITRHSSVLTFAIGAVGNSSQDLKIFVGNLTSDINVDKLTALFGQAGTVVHAEVIYTWDKDQRFGCITMSTVEEVEKAVNKFDGYELNGKLLTVSTTDDPRKAQPDLPSRPLAFDSPFSVYVHSLTREIDNAGLEEIFSKYGKVESVEIVCDKVTGRTRGFGFVTMSNETDMKNAIAGLHKKMDMGDRKLMVSELPRNL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02930 273 SUPERFAMILY RNA-binding domain, RBD 178 267 IPR035979 GO:0003676
Trre16g02930 273 SMART rrm1_1 193 267 IPR000504 GO:0003723
Trre16g02930 273 SMART rrm1_1 98 169 IPR000504 GO:0003723
Trre16g02930 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
Trre16g02930 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Trre16g02930 273 PANTHER OS02G0815200 PROTEIN 78 267 - -
Trre16g02930 273 Gene3D - 174 271 IPR012677 -
Trre16g02930 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Trre16g02930 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Trre16g02930 273 Gene3D - 93 173 IPR012677 -
Trre16g02930 273 SUPERFAMILY RNA-binding domain, RBD 93 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02930 Trre-Chr16 25121045 25122382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02930 99 267 Eukaryotic Initiation Factors Gene Family AT1G22760 28.249 3.63e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02930 - - tpra:123920845 285.804