Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g02929 | ATGTCTTTCACTTCCTTCAAATCTCTTACAATGGCTGAATCTTGCTTACTCTCTCAACCTTCACTCTTCCACACCAAAACCAAATCCTCATTCATCTCTAACTCTGCTAAGTCCTTCAAGATACAAAACCCTTCATACAATTCTTCAAAGTTTTCACAATCTATTTCTCTCACTATCAGTAACAGAAGAACACGTGATTCTTCTTTTGTCACATTTGTTGCACAGACATCTGATTGGACTCAGGAAGAGAAAGAAGATGGAGCATGGGAGAATCAAGGTGAAACTGCTTGGGTTGGTGAAACTGAAACAGCTGAGAGTGATGGTGATGTTCCTAGATTTGAAGAACCTTCTGAAGAGTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGACAAATTGGCTGAGCTTTTTGAGCAGGCTGGGACTGTTGAAGTTGCTGAGGTAATTTATAACAGGGAGACTGACCGTAGTCGTGGGTTTGGATTTGTAACAATGAGTACAGCTGAAGAAGTTGAGAGGGCTGTGAACAAGTTCAGTCGCTATGAATTAGATGGAAGACTGTTGACTGTTAATAAGGCTGCTCCAAGAGGATCACCACGGCCTGAGCGTCCACCACGTGCCTTTGATTCTGGTTCTGGTTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGACAATTCTAGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTTGAGGATGCTCGGGTAGTCATTGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTTAAAATGGCGAGTGAGGATGATGTGAATGAAGCAATTGCTGCTCTTGACGGTCAGAGCATGAACGGAAGGGCAATTAGAGTGAATGTTGCCGAGGAAAGACCCAGGCGCAATTTCTGA | 906 | 0.4305 | MSFTSFKSLTMAESCLLSQPSLFHTKTKSSFISNSAKSFKIQNPSYNSSKFSQSISLTISNRRTRDSSFVTFVAQTSDWTQEEKEDGAWENQGETAWVGETETAESDGDVPRFEEPSEELKIFVGNLPFDVDSDKLAELFEQAGTVEVAEVIYNRETDRSRGFGFVTMSTAEEVERAVNKFSRYELDGRLLTVNKAAPRGSPRPERPPRAFDSGSGLRVYVGNLPWDVDNSSLEQLFSEHGKVEDARVVIDRETGRSRGFGFVKMASEDDVNEAIAALDGQSMNGRAIRVNVAEERPRRNF | 301 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g02929 | 301 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 122 | 191 | IPR000504 | GO:0003723 | |
Trre16g02929 | 301 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 219 | 289 | IPR000504 | GO:0003723 | |
Trre16g02929 | 301 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 299 | IPR035979 | GO:0003676 | |
Trre16g02929 | 301 | SMART | rrm1_1 | 218 | 291 | IPR000504 | GO:0003723 | |
Trre16g02929 | 301 | SMART | rrm1_1 | 121 | 194 | IPR000504 | GO:0003723 | |
Trre16g02929 | 301 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 120 | 198 | IPR000504 | GO:0003723 | |
Trre16g02929 | 301 | PANTHER | OS02G0815200 PROTEIN | 5 | 298 | - | - | |
Trre16g02929 | 301 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 205 | 301 | - | - | |
Trre16g02929 | 301 | Gene3D | - | 203 | 300 | IPR012677 | - | |
Trre16g02929 | 301 | Gene3D | - | 60 | 202 | IPR012677 | - | |
Trre16g02929 | 301 | CDD | RRM2_NsCP33_like | 218 | 293 | - | - | |
Trre16g02929 | 301 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 217 | 295 | IPR000504 | GO:0003723 | |
Trre16g02929 | 301 | SUPERFAMILY | RNA-binding domain, RBD | 116 | 209 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g02929 | Trre-Chr16 | 25116751 | 25118864 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g02929 | 122 | 300 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.609 | 1.41e-20 | 90.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g02929 | - | - | gmx:100804984 | 360.918 |