Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02929 ATGTCTTTCACTTCCTTCAAATCTCTTACAATGGCTGAATCTTGCTTACTCTCTCAACCTTCACTCTTCCACACCAAAACCAAATCCTCATTCATCTCTAACTCTGCTAAGTCCTTCAAGATACAAAACCCTTCATACAATTCTTCAAAGTTTTCACAATCTATTTCTCTCACTATCAGTAACAGAAGAACACGTGATTCTTCTTTTGTCACATTTGTTGCACAGACATCTGATTGGACTCAGGAAGAGAAAGAAGATGGAGCATGGGAGAATCAAGGTGAAACTGCTTGGGTTGGTGAAACTGAAACAGCTGAGAGTGATGGTGATGTTCCTAGATTTGAAGAACCTTCTGAAGAGTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGACAAATTGGCTGAGCTTTTTGAGCAGGCTGGGACTGTTGAAGTTGCTGAGGTAATTTATAACAGGGAGACTGACCGTAGTCGTGGGTTTGGATTTGTAACAATGAGTACAGCTGAAGAAGTTGAGAGGGCTGTGAACAAGTTCAGTCGCTATGAATTAGATGGAAGACTGTTGACTGTTAATAAGGCTGCTCCAAGAGGATCACCACGGCCTGAGCGTCCACCACGTGCCTTTGATTCTGGTTCTGGTTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGACAATTCTAGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTTGAGGATGCTCGGGTAGTCATTGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTTAAAATGGCGAGTGAGGATGATGTGAATGAAGCAATTGCTGCTCTTGACGGTCAGAGCATGAACGGAAGGGCAATTAGAGTGAATGTTGCCGAGGAAAGACCCAGGCGCAATTTCTGA 906 0.4305 MSFTSFKSLTMAESCLLSQPSLFHTKTKSSFISNSAKSFKIQNPSYNSSKFSQSISLTISNRRTRDSSFVTFVAQTSDWTQEEKEDGAWENQGETAWVGETETAESDGDVPRFEEPSEELKIFVGNLPFDVDSDKLAELFEQAGTVEVAEVIYNRETDRSRGFGFVTMSTAEEVERAVNKFSRYELDGRLLTVNKAAPRGSPRPERPPRAFDSGSGLRVYVGNLPWDVDNSSLEQLFSEHGKVEDARVVIDRETGRSRGFGFVKMASEDDVNEAIAALDGQSMNGRAIRVNVAEERPRRNF 301
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02929 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Trre16g02929 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Trre16g02929 301 SUPERFAMILY RNA-binding domain, RBD 212 299 IPR035979 GO:0003676
Trre16g02929 301 SMART rrm1_1 218 291 IPR000504 GO:0003723
Trre16g02929 301 SMART rrm1_1 121 194 IPR000504 GO:0003723
Trre16g02929 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Trre16g02929 301 PANTHER OS02G0815200 PROTEIN 5 298 - -
Trre16g02929 301 FunFam 31 kDa ribonucleoprotein, chloroplastic 205 301 - -
Trre16g02929 301 Gene3D - 203 300 IPR012677 -
Trre16g02929 301 Gene3D - 60 202 IPR012677 -
Trre16g02929 301 CDD RRM2_NsCP33_like 218 293 - -
Trre16g02929 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Trre16g02929 301 SUPERFAMILY RNA-binding domain, RBD 116 209 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g02929 Trre-Chr16 25116751 25118864 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02929 122 300 Eukaryotic Initiation Factors Gene Family AT4G34110 29.609 1.41e-20 90.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02929 - - gmx:100804984 360.918