Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02924 ATGGAAAACTCGGATGAATATATTGATGTTGATTCCAATAAGGTTCATTCCACTGATGATGATACAGCTGATGTTGAATTGAATGATGATGAGGACGACAGTTATTCTGTATCAAGTGGGTCTGAAAGTTCAAATGATGGCGATGATGCTGACAAAGGCAGTGATGATAAACCAGTAGAAGTAGATGTAGTCGTAGGTGATAGAGTGGTAAGTATCAATTCAATTACTTCTGAAGAAATTTGTGCTATGGAATTTGGTACTGTTGATGAAGCGTTTGAATTTTATTATCGGTATGGTAAATGTAAAGGTTTTGCCGTTAGGAAAAGTGATAGGAGAAAAGACCGTAAAGGCAGTAAAAAACTAATGATGAGGCAGTTTGTATGCAACAAACATGGGTTTAGAGATAAGAAACACTTGTGCAGGATAGATAGGAAAAGAGAGCATAGACGTTTGACCCGTACTGGTTGCGCTGCTAGGCTTCGTGTGCAATACAAACGCAAAAAGGATAGATATGTAGTGTCAATTTTTGAAGAGGAGATTTTCAAAGAAGTTAAAGAGCAAATTATGAAGGCTGGTGCATTGATTGTTAAGGATAAGCATGAAAATGGGGATACGAAGGTTTATACATTAACAAAATATTGTAAAGATAATTATGAAAGAGAGGTTGTTTATGATGGTTCAACATTGAATTGTTCGTTTGATTCGAATATGATGGAGCTTTCTCGTTTTGGTGCATATTGTTCTGTTTTTACTAATTTTTACAAAGAAGTATCTAAAAAGGATGGTGTTTATGGGGAAGTAATAGATGACATAATGAATTTACAAAAAAATTATTGCAGTACTGATGTTCCTATTAGGACACAAAAGTCGACCGTACATGATCCAATTCCGGTGAAAGGTAGAGGTGCTCCAAAGAAAAAAAAGACTGACACCAAATCTATTAGGCATTGTGGCTATGCAAGAGTACAACTCATACATGCAAAAAAAGTACCAGTTGAAAAAAATGTTGAGTTGGATTCGGTGTCATTAACTGATTTTGTAAGCCAAACTAAGAAGAACAAGAAAAGAAAAACAAGTTGCAAGGGTGAACCAAGCGTGCAAAAGAATTGTTCAGATGGACCGCAAAATCGTGGCGATAATGTTACAATGGGACAGATCTCTTCAATGTATGCAGCTCAACCTATGATGCATGTGATACATCCGGGAGGTCATCCGATGCAAGTGCAACCCGTGTATCCAATATATGGAATGCCCGTTGGTGAAAATTCAAATTCGTGCTTCGGTCTCCTACAACAAGTGATGAAATCTGCTGGTAAAGAATGA 1323 0.3689 MENSDEYIDVDSNKVHSTDDDTADVELNDDEDDSYSVSSGSESSNDGDDADKGSDDKPVEVDVVVGDRVVSINSITSEEICAMEFGTVDEAFEFYYRYGKCKGFAVRKSDRRKDRKGSKKLMMRQFVCNKHGFRDKKHLCRIDRKREHRRLTRTGCAARLRVQYKRKKDRYVVSIFEEEIFKEVKEQIMKAGALIVKDKHENGDTKVYTLTKYCKDNYEREVVYDGSTLNCSFDSNMMELSRFGAYCSVFTNFYKEVSKKDGVYGEVIDDIMNLQKNYCSTDVPIRTQKSTVHDPIPVKGRGAPKKKKTDTKSIRHCGYARVQLIHAKKVPVEKNVELDSVSLTDFVSQTKKNKKRKTSCKGEPSVQKNCSDGPQNRGDNVTMGQISSMYAAQPMMHVIHPGGHPMQVQPVYPIYGMPVGENSNSCFGLLQQVMKSAGKE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02924 440 MobiDBLite consensus disorder prediction 1 58 - -
Trre16g02924 440 Pfam FAR1 DNA-binding domain 93 179 IPR004330 -
Trre16g02924 440 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 179 - -
Trre16g02924 440 MobiDBLite consensus disorder prediction 363 378 - -
Trre16g02924 440 MobiDBLite consensus disorder prediction 7 22 - -
Trre16g02924 440 MobiDBLite consensus disorder prediction 352 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02924 Trre-Chr16 25043869 25046626 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre16g02924 FAR1 5.3e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02924 - - tpra:123885599 186.037