Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02921 ATGAGTCAGTTTGTATGCAACAAACATGGGTTTAGAGATAAGAAACACTTGTGCAGGATAGATAGGAAAAGAGAGCATAGACGTTTGACCCGTACTGGTTGCGCTGCTAGGCTTCGTGTGCAATACAAACGCAAAAAGGATAGATATGTAGTGTCAATTTTTGAAGAGGGTCATAACCATGAATTAACCCCATCCAAGTATGTGCACTTACACCCCATTTATCGACAAATTTCTGAAGCAGATAGAGCTCAGATTGATGCTCTTCAGTCACACGGAGTTAGAACTTGTCATATAATGGGGTACATGGTTGCTCAGAAGGGTGGACAAGCGGATGTTGGGTTTACAAAGAAAGATCTGTATAATTATTTTGATAAAAAAATGCGTGACAATATTAAAGATGGTGATGTTGTCGCTGCTCTAGATCATTTAAAGGCGAAGTCGTCTACTGATGCTATGCTATATGCTGAATATGCTGTCAACGAGAGTGATGGACGAATGAAATGTCTTTTTTGGGCTGCTGGGGGTAGTAGATCAGACTATTTTTGTTTTGGCGATGTGGTTGCCTTTAACACAACTTACAAAAAGAACTAA 591 0.3976 MSQFVCNKHGFRDKKHLCRIDRKREHRRLTRTGCAARLRVQYKRKKDRYVVSIFEEGHNHELTPSKYVHLHPIYRQISEADRAQIDALQSHGVRTCHIMGYMVAQKGGQADVGFTKKDLYNYFDKKMRDNIKDGDVVAALDHLKAKSSTDAMLYAEYAVNESDGRMKCLFWAAGGSRSDYFCFGDVVAFNTTYKKN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02921 196 PANTHER OS01G0519700 PROTEIN 3 189 - -
Trre16g02921 196 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
Trre16g02921 196 ProSiteProfiles WRKY domain profile. 24 63 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02921 Trre-Chr16 24992858 24993448 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre16g02921 FAR1 8.2e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02921 - - tpra:123910027 341.658