Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02919 ATGGAGATGGAACGCGTCTTCGAATTTCCTCATAGTCACATGGATCGGCGTCCAAGAAAGAGAGCGAGATTGGGTTGGGATGTTCCTGAAACCCCTAAGGCTCAGGTAGGATTGTTTTTTGGACAAGAGCTTGGGAATATTTCAAGCTATGCTCCCTCAGGGGTTACTTCAGAAAATATCACTAGTTCTGTAATTGTTAAGGGTGATGCTCGAAATGGTTCTCCCCCTTGGCGAAATGATGACAAAGATGGCCATTACATGTTTGCTGTTGGAGATAATTTAACTTCCCGCTATAAGATCCACAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTATTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTCCGTGGAATAAAAAAGTATCGAGAAGCAGCTATGATAGAAATTGAGATGTTGCAGCAGCTTGGTAAACATGATATGGGTGGTAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTATAGCATTTATGCATGATTTGCGCATGATCCACACTGACTTAAAGCCTGAAAACATACTCCTTGTTTCGTCAGACTATGTCAAAGTTCCTGACTACAAGATTTCATCTAGATCACCAAATTCATATTTCAAGAAAGTGCCTAAGTCTAGTGCTATCAAGGTTATTGATTTTGGTAGTACCACTTATGAGCGAGTAGATCAGAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGTCTTGGCTGGAGTCATCCATGTGATATATGGAGTGTGGGATGTATATTGGTCGAGTTATGCACGGGCGAAGCTTTGTTTCAGACTCATGAAAATTTAGAACACCTTGCCATGATGGAGAGGGTACTTGGTTCACTACCAATGCATATGTTGAAGAGAGTTGACCGGCATGCTGAGAAGTATGTTAGAAGAGGTAAACTAGACTGGCCAGTGGGTGCAACCTCGAGGGAGAGTATTAAAGCTGTGACAAAGCTCCCCAGACTCCAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATTCATCTGTTGCAAGGGTTACTTAGATATGACCCCTCCGAAAGAATAACAGCTAAGGAAGCCCTTAGACATTCCTTTTTTATGAGGAGATCATATTAG 1287 0.4157 MEMERVFEFPHSHMDRRPRKRARLGWDVPETPKAQVGLFFGQELGNISSYAPSGVTSENITSSVIVKGDARNGSPPWRNDDKDGHYMFAVGDNLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDMGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSSDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGSLPMHMLKRVDRHAEKYVRRGKLDWPVGATSRESIKAVTKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERITAKEALRHSFFMRRSY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02919 428 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02919 428 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Trre16g02919 428 FunFam Serine/threonine-protein kinase AFC2 174 423 - -
Trre16g02919 428 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02919 428 CDD PKc_CLK 85 423 - -
Trre16g02919 428 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Trre16g02919 428 SUPERFAMILY Protein kinase-like (PK-like) 85 424 IPR011009 -
Trre16g02919 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Trre16g02919 428 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02919 428 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 425 - -
Trre16g02919 428 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02919 Trre-Chr16 24971608 24975063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02919 103 423 Core Cell Cycle Gene Families AT1G76540 25.904 6.25e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trre16g02919 Pkinase 5.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02919 K08287 - gmx:100804452 800.816