Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02918 ATGGAGATGGAACGCGTCTTCGAATTTCCTCATAGTCACATGGATCGGCGTCCAAGAAAGAGAGCGAGATTGGGTTGGGATGTTCCTGAAACCCCTAAGGCTCAGGTAGGATTGTTTTTTGGACAAGAGCTTGGGAATATTTCAAGCTATGCTCCCTCAGGGGTTACTTCAGAAAATATCACTAGTTCTGTAATTGTTAAGGGTGATGCTCGAAATGGTTCTCCCCCTTGGCGAAATGATGACAAAGATGGCCATTACATGTTTGCTGTTGGAGATAATTTAACTTCCCGCTATAAGATCCACAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTATTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTCCGTGGAATAAAAAAGTATCGAGAAGCAGCTATGATAGAAATTGAGATGTTGCAGCAGCTTGGTAAACATGATATGGGTGGTAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATTTATGCATGATTTGCGCATGATCCACACTGACTTAAAGCCTGAAAACATACTCCTTGTTTCGTCAGACTATGTCAAAGTTCCTGACTACAAGATTTCATCTAGATCACCAAATTCATATTTCAAGAAAGTGCCTAAGTCTAGTGCTATCAAGGTTATTGATTTTGGTAGTACCACTTATGAGCGAGTAGATCAGAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGTCTTGGCTGGAGTCATCCATGTGATATATGGAGTGTGGGATGTATATTGGTCGAGTTATGCACGGGCGAAGCTTTGTTTCAGACTCATGAAAATTTAGAACACCTTGCCATGATGGAGAGGGTACTTGGTTCACTACCAATGCATATGTTGAAGAGAGTTGACCGGCATGCTGAGAAGTATGTTAGAAGAGGTAAACTAGACTGGCCAGTGGGTGCAACCTCGAGGGAGAGTATTAAAGCTGTGACAAAGCTCCCCAGACTCCAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATTCATCTGTTGCAAGGGTTACTTAGATATGACCCCTCCGAAAGAATAACAGCTAAGGAAGCCCTTAGACATTCCTTTTTTATGAGGAGATCATATTAG 1278 0.4163 MEMERVFEFPHSHMDRRPRKRARLGWDVPETPKAQVGLFFGQELGNISSYAPSGVTSENITSSVIVKGDARNGSPPWRNDDKDGHYMFAVGDNLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDMGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLEFMHDLRMIHTDLKPENILLVSSDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGSLPMHMLKRVDRHAEKYVRRGKLDWPVGATSRESIKAVTKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERITAKEALRHSFFMRRSY 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02918 425 Pfam Protein kinase domain 98 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02918 425 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Trre16g02918 425 ProSiteProfiles Protein kinase domain profile. 98 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02918 425 CDD PKc_CLK 85 420 - -
Trre16g02918 425 Gene3D Transferase(Phosphotransferase) domain 1 152 420 - -
Trre16g02918 425 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 422 - -
Trre16g02918 425 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Trre16g02918 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Trre16g02918 425 SMART serkin_6 98 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02918 425 FunFam Serine/threonine-protein kinase AFC2 174 420 - -
Trre16g02918 425 SUPERFAMILY Protein kinase-like (PK-like) 85 421 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02918 Trre-Chr16 24971608 24975063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02918 96 420 MAP Kinase Gene Family AT5G19010 28.280 2.21e-25 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trre16g02918 Pkinase 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02918 K08287 - gmx:100804452 788.875