Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02892 ATGGAATCAAATCCCAAAAATACCATCAAATTCCTCTTTAGCTACGGTGGCAAAATCCTTCCCCGCCTCACCGACGGCAAACTCCGATACTCCGGCGGCCACACCAGAGTCCTCGCACTCCCTCCCCCCATTTCATTCTCAGGATTAATGGTGAAGCTTATGGAATTGTGTGGTTCATCTTCAGTAACATTAAAATGTCCATTACCAAATGGAGATTTAGAGACATTGATTTCAATCACCAGCGATGTAGATCTAGCAAATATAATTGAAGAATACGATCGAGCTTCTTCATCATTAACTTATCCCTTGAAGATCAGAGCTATTCTTTCACTTCCCAAATCTCTGAAGAAATTATCTCCTCCTCCGTCCACTTCGTCCAGTGCAACTCAATCTCCGTCAGGTTCGCTTCACACCTCCGCAGAATCACTGCCGTATGCGGCTGTGAATCGAATTAACCGCATGAATTGCTCGCTGGTTTCATCAGTTGGGTATCCGATTGGTATTCGGAATGGAGTGAAAGGTAGTTGTTACAAAGGACAATTAGCTGGAAGTCCTAGATTTCCTTATCGCTTCTCTAATAATTATTGCCACTGA 594 0.436 MESNPKNTIKFLFSYGGKILPRLTDGKLRYSGGHTRVLALPPPISFSGLMVKLMELCGSSSVTLKCPLPNGDLETLISITSDVDLANIIEEYDRASSSLTYPLKIRAILSLPKSLKKLSPPPSTSSSATQSPSGSLHTSAESLPYAAVNRINRMNCSLVSSVGYPIGIRNGVKGSCYKGQLAGSPRFPYRFSNNYCH 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02892 197 Gene3D - 27 108 - -
Trre16g02892 197 PANTHER OS05G0427100 PROTEIN-RELATED 3 157 - -
Trre16g02892 197 SMART PB1_new 23 112 IPR000270 GO:0005515
Trre16g02892 197 MobiDBLite consensus disorder prediction 116 137 - -
Trre16g02892 197 SUPERFAMILY CAD & PB1 domains 25 119 - -
Trre16g02892 197 MobiDBLite consensus disorder prediction 117 137 - -
Trre16g02892 197 Pfam PB1 domain 25 97 IPR000270 GO:0005515
Trre16g02892 197 CDD PB1_UP2 14 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02892 Trre-Chr16 24726377 24727218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02892 7 91 MAP Kinase Kinase Kinase AT2G35050 48.235 1.56e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02892 - - mtr:25493721 247.669