Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02888 ATGGATACACCACTCTTCCATTTCCTCCACCTTCTCCTCCTTATCCCAACCATTCACTCCCTCGACTTCATCTTCAACTCCTTCAACACCACCACAAACCTCACTCTCACCAACGACACCCGAATAGAATCCTCCGTAATCCGTTTGACCAACGACTCCAACCAATTCTCTCTCGGTAGATTCTTCTTCCACACAAAAATCCCCATGATCACTTCCTTCTCCACTTCCTTCATCTTCTCTATCTTACCTCAAAACCCTAACAGCCCCGGTTTCGGTCTCGCTTTCGTTCTCTGCAACACCACTTCCCCTCCCGGCGCAATCGCTAGTCAATACTTCGGTTTATTCACTAACGCCGTTACTCCCACCGTTTTCCCTCTCTTCGCCGTCGAATTCGATACCGGAAGAAACCCTGAGTTCAACGATCACGATAACAATCACATCGGAATCGATCTCAATAACATCGAATCAAAAACACAAACACCTGCTGGATATTACAACTCCACCGGGAAATTTGTACCGGTGCAAATGAACAGCGGAGAAAATGTTCGAGCGTGGATTGAATTTAACGGCAAGAATTTCGAGATAAATGTTACTGTTGCTCCGATCGGTGTTTCACGACCTCTGAAACCAACGCTTTCTTATAGAGATCCGAATATTATTAATTATCTTTCTCCTGAAATGTTTGTTGGTTTTTCGGCTTCGAAAACGAATTGGATTGAAGCTCAAAGAGTTCTAGCATGGAGTTTCAGTGATTCAGGAACTGCAAAGGAGTTAAACACAACGAATTTACCGGTTTTCAAGCGAGAATCGTCGAATTCGCTTTCCGTTAAAGCTATTGCAGGGATTGTAGTTGGTTGTATTGTTTTAGTGTGTTTTAGTTTGTTTATGTTATATTTTCTATGGTGGAAAAGAAGAAGAAATGAAGATGATGATGATGTGGAAGAATGGGAAATGGAGTATTGGCCTCATAGATTTTCTTATGAGGAACTATGCATAGCTACAAAGGATTTTCATAATGAGAAGCTTATAGGTTCTGGAGGATTTGGAAGAGTTTACAAAGGAACACTGGTGAATAAAACATTGATTGCGGTTAAGTGTGTTAATCATGATTCTAAACAAGGGTTAAGAGAGTTTATGGCAGAGATTTCAAGTATGGGAAGGCTTCAGCATAAGAATTTAGTGCAAATGAAGGGGTGGTGTAGAAAGGGTAATGAACTTATGTTGGTTTATGATTACATGCCTAATGGAAGTTTAAACAAGTGGGTTTTTGATAAACCTGAGAAAGTTTTGGGATGGAATCAGCGACGTAGGGTTCTTGTTGATGTAGCAGAAGGGCTTAATTATCTTCATCATGGTTGGGATCAGGTTGTTATTCATAGGGATATTAAATCTAGTAATATTTTGTTGGATGCTGATATGAGAGGAAGATTGGGAGATTTTGGTTTGGCTAAGCTTTACCAACATGGGCAAGTTCCGAATACTACACGTGTGGTGGGGACAATAGGGTATTTGGCGCCGGAAATAGCAAACGTTGCTGCGCCTACTTCGGCTAGTGATGTGTATAGTTTTGGGGTGGTGTTGTTGGAAGTGGCTTGTGGAAGGAGGCCGTTGGAGGCGATGGTGGTGGATGAGGAAGTTGTGCTTATTGATTGGGTTAGAGAGTTGTATGCAAGAGGGTGTGTAGTTGAAGCTGCGGATAGTAGGATGAAAGGTGAGTACGATGTGGGTGATATGGAGATGGTGTTGAAGCTCGGGTTGGCTTGTTGTCATCCTGACCCAAATAGGAGGCCGACTATGAAGGAAGTTGTTGCGCTTCTTCTTGGCGAGGATGTTGCAGATGCGCCGGGGAAAGTTTTGTCCGATTTGGCTCGCGGTGATGATAATGGTGGCGGTGCCAGGGAATCGGATGAGGAGGTGCCTTTGCAATCCTCCTCTCCTATTTGA 1944 0.4326 MDTPLFHFLHLLLLIPTIHSLDFIFNSFNTTTNLTLTNDTRIESSVIRLTNDSNQFSLGRFFFHTKIPMITSFSTSFIFSILPQNPNSPGFGLAFVLCNTTSPPGAIASQYFGLFTNAVTPTVFPLFAVEFDTGRNPEFNDHDNNHIGIDLNNIESKTQTPAGYYNSTGKFVPVQMNSGENVRAWIEFNGKNFEINVTVAPIGVSRPLKPTLSYRDPNIINYLSPEMFVGFSASKTNWIEAQRVLAWSFSDSGTAKELNTTNLPVFKRESSNSLSVKAIAGIVVGCIVLVCFSLFMLYFLWWKRRRNEDDDDVEEWEMEYWPHRFSYEELCIATKDFHNEKLIGSGGFGRVYKGTLVNKTLIAVKCVNHDSKQGLREFMAEISSMGRLQHKNLVQMKGWCRKGNELMLVYDYMPNGSLNKWVFDKPEKVLGWNQRRRVLVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDADMRGRLGDFGLAKLYQHGQVPNTTRVVGTIGYLAPEIANVAAPTSASDVYSFGVVLLEVACGRRPLEAMVVDEEVVLIDWVRELYARGCVVEAADSRMKGEYDVGDMEMVLKLGLACCHPDPNRRPTMKEVVALLLGEDVADAPGKVLSDLARGDDNGGGARESDEEVPLQSSSPI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02888 647 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Trre16g02888 647 Gene3D Transferase(Phosphotransferase) domain 1 413 613 - -
Trre16g02888 647 Gene3D Phosphorylase Kinase; domain 1 307 412 - -
Trre16g02888 647 SUPERFAMILY Protein kinase-like (PK-like) 313 606 IPR011009 -
Trre16g02888 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 267 IPR013320 -
Trre16g02888 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Trre16g02888 647 Pfam Legume lectin domain 20 263 IPR001220 GO:0030246
Trre16g02888 647 FunFam L-type lectin-domain containing receptor kinase S.1 322 412 - -
Trre16g02888 647 ProSiteProfiles Protein kinase domain profile. 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02888 647 FunFam L-type lectin-domain containing receptor kinase S.4 413 617 - -
Trre16g02888 647 PANTHER - 35 608 - -
Trre16g02888 647 Pfam Protein kinase domain 337 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02888 647 CDD lectin_legume_LecRK_Arcelin_ConA 43 253 IPR001220 GO:0030246
Trre16g02888 647 SMART serkin_6 337 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02888 647 Gene3D - 19 267 - -
Trre16g02888 647 CDD STKc_IRAK 343 606 - -
Trre16g02888 647 MobiDBLite consensus disorder prediction 618 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02888 Trre-Chr16 24650988 24652931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02888 20 613 Receptor kinase-like Gene Family AT1G15530 65.082 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre16g02888 Pkinase 4.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02888 - - gmx:100780660 966.837