Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02886 ATGACTCCAGAAATTTCTGAAAAATTTGGAGAACTCAAAAGTTTAACTAGTAACAGAAACAAAGTTAATGAAATAGTACCGGATGATGGTAGCGAAGAAAACGGCGAATTTGTTGTTCCATATTCTATACAAATATTGTCAACAGAAATTGTGGAAATTGTTGAGGATGGAAAGAGTATAACAATCAACAAAGATAGAAGAGTTGATGATCTTTATGTTGCTGTTGGAGAAGATGATTTGGATGTTGTGAAATGGGTTCTTGATCATGCTGTTTCACCTGGTTCTAGGATTTTTCTTGTCCATGTTTCTCTTCCAATAACATTGATTCCTACACCAGTTGGGATGCTTGAAAGAAACCAACTGACCCCACAACAAGTAAGGCGTTACCTAAATGAAGTGAACAATAAGAGGAAAGATCTTTTGCAGAAGTATATCCAGCTGAGTACTGAAGCAAAGGTAACTGCAGAAACATTGATTCTAGAGAGTAAGTTCAAAGGAAAAGCCATTTTGGATCTTATCTCTATTCTTAACATAACCAACCTTGTATTAGGAATCAAAAAGCTACCATGCAAACGGCGCAATGATAAATTGAGTGAAGGTGTATTCGTAAAGAAAAATGCACCAAAAACATGTGATGTTACATTGATTTACAATGGCGAGGTGTTTATGTCTGATGCTTTTGTGGATCAACAAATGCCATCCTACTGTTTATTTTCGCAAAATAAAGATCATTCAAAACGCAAATTCTTTCAGTGTATCTGCTTTTCAGGCAAGTCAAGTTAA 783 0.3538 MTPEISEKFGELKSLTSNRNKVNEIVPDDGSEENGEFVVPYSIQILSTEIVEIVEDGKSITINKDRRVDDLYVAVGEDDLDVVKWVLDHAVSPGSRIFLVHVSLPITLIPTPVGMLERNQLTPQQVRRYLNEVNNKRKDLLQKYIQLSTEAKVTAETLILESKFKGKAILDLISILNITNLVLGIKKLPCKRRNDKLSEGVFVKKNAPKTCDVTLIYNGEVFMSDAFVDQQMPSYCLFSQNKDHSKRKFFQCICFSGKSS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02886 260 Coils Coil 130 150 - -
Trre16g02886 260 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 16 258 - -
Trre16g02886 260 Gene3D HUPs 72 198 IPR014729 -
Trre16g02886 260 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 77 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02886 Trre-Chr16 24618148 24620012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02886 59 224 U-box Gene Family AT3G61390 30.814 5.44e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02886 - - pvu:PHAVU_003G204300g 352.058