Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02885 ATGAACCCTTACGACAGTCGTTACTCCGATTCCACTTCTTTTCGCGGCCGCCGCAGTGATCTGGTTGGTCCTATGCCGCCGCCTAATTTCGGCCGTGGAGGTCCTGCTCCGTACAGTGCTCCTTATGCAGCACACGCACCTACCGGTTTCGGATCCGCACCTGTTACCCCTATTCCTCACTTTCTGCCTCCTCCTGGTGGCGGTGGATTTAGTGTAGGTCGTGGTGGTGGTGGTGGTGGTTTTAGTTCTAGACCGAGCAACGGTCACACGGGTGATAGAAAGTATGACACGGGTCGTTATGGTGGTAGTAGTGGTGGAAGAGGTGGTGGTGGTGGTGGTAGAGGTGGAAGTCAAGGTTATAGAGGCTCTGGTAGAGGAGGTAGTGGAGGGAGAGGTGGTGGGTTTGGAGGTAGACATGGATCTTCTAAGGATGACTTGAATAACATTAATCTTCCAAAGCAAGATTTTAGGAATTTGGTACCTTTTCAGAAGAATTTCTATGTTGAAAGTCCTCAGATACAAGCTATGTCTGATATTCAAGTTATGCAGTACCGACTTAGTAGGGATATCACTGTGGAAGGGCATGATGTGCCGAAGCCAATTCGGTCTTTTCATGAGGCTAATTTTCCTGATCACTGTCTTGATGTAATTGCCAAGTTGGGTTTTGTTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTACCGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTACTTCCTGCTTTAGTTCATGTCAGTGCACAACCTCGATTGGCACAAGGGGAAGGTCCTATTGTCTTGGTTTTAGCGCCAACTAGAGAGTTAGCTGTTCAGATTCAACAAGAAGCTATGAAATTTGGGTCACGATCAAGTATTAAATGTACATGCATATACGGCGGTGCTCCAAAGGGGCCACAAATCCGTGACCTTAGAATGGGTGTTGAGATTGTTATTGCTACTCCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACATACCTTGTCTTGGACGAAGCTGATCGAATGTTGGATATGGGTTTTGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGACCAGATAGGCAGACATTATACTGGAGTGCGACGTGGCCAAAGGAGGTTGAAACTCTTGCAAGACAGTTTCTGCAGAACCCATATAAGGTAGTTATTGGATCACCATATCTAAAAGCAAATCAATCAATAAATCAAGTTGTTGAAGTTGTCTCTGACATGGAGAAATATAACAGATTGATCAAGCTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTACTGAAACAAAAAAGGGATGTGACCAAATTACAAAACAATTGAGAATGGATGGATGGCCAGCATTATCCATTCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGATATAAAATGCGTGGTCAATTATGATTTTCCATCAAGCCTTGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACAGTTTTTTTACCCGTGCTAATGCCAAGTATGCTAGGGATTTGATTAAGATCTTGCAAGATGCTGGTCAGATTGTTAGTCCTGCATTGTCTGAATTGACTCGGTCAGCTGGCTTTGGTCAACAGGCAGCAAGGGGAGGCTTTCGATCAAGAGGACGAGGAGGAGGCTATGGCAATCGGGGTTCAACATCGGGATCCAATGCTATTCCTGTAGGTGGGAAGAGGCCTTGGCAGTTACGGTAG 1884 0.4586 MNPYDSRYSDSTSFRGRRSDLVGPMPPPNFGRGGPAPYSAPYAAHAPTGFGSAPVTPIPHFLPPPGGGGFSVGRGGGGGGFSSRPSNGHTGDRKYDTGRYGGSSGGRGGGGGGRGGSQGYRGSGRGGSGGRGGGFGGRHGSSKDDLNNINLPKQDFRNLVPFQKNFYVESPQIQAMSDIQVMQYRLSRDITVEGHDVPKPIRSFHEANFPDHCLDVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLAQGEGPIVLVLAPTRELAVQIQQEAMKFGSRSSIKCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVETLARQFLQNPYKVVIGSPYLKANQSINQVVEVVSDMEKYNRLIKLLKEVMDGSRILIFTETKKGCDQITKQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTRANAKYARDLIKILQDAGQIVSPALSELTRSAGFGQQAARGGFRSRGRGGGYGNRGSTSGSNAIPVGGKRPWQLR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02885 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 562 IPR027417 -
Trre16g02885 627 SMART helicmild6 461 542 IPR001650 -
Trre16g02885 627 CDD SF2_C_DEAD 421 551 - -
Trre16g02885 627 SMART ultradead3 221 424 IPR014001 -
Trre16g02885 627 FunFam probable ATP-dependent RNA helicase DDX17 164 411 - -
Trre16g02885 627 Gene3D - 413 584 IPR027417 -
Trre16g02885 627 MobiDBLite consensus disorder prediction 591 627 - -
Trre16g02885 627 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 202 230 IPR014014 GO:0003724
Trre16g02885 627 MobiDBLite consensus disorder prediction 55 150 - -
Trre16g02885 627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 408 IPR014001 -
Trre16g02885 627 Pfam Helicase conserved C-terminal domain 432 542 IPR001650 -
Trre16g02885 627 MobiDBLite consensus disorder prediction 1 36 - -
Trre16g02885 627 Pfam DEAD/DEAH box helicase 226 397 IPR011545 GO:0003676|GO:0005524
Trre16g02885 627 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 175 580 - -
Trre16g02885 627 FunFam ATP-dependent RNA helicase RhlB 412 584 - -
Trre16g02885 627 Gene3D - 165 412 IPR027417 -
Trre16g02885 627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 581 IPR001650 -
Trre16g02885 627 CDD DEADc_DDX5_DDX17 214 409 - -
Trre16g02885 627 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 354 362 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02885 Trre-Chr16 24605743 24610029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02885 190 580 Eukaryotic Initiation Factors Gene Family AT3G19760 34.949 2.98e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02885 K12823 - gmx:100777610 875.159