Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02883 ATGGGTCGTCATTCATGTTGTTTAAAACAAAAATTAAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAAAAGCTTTTCAATCACATAACAAGATTTGGTGTTGGTTGCTGGAGTTCTGTTCCAAAACAAGCTGGGCTTCAAAGATGTGGAAAAAGTTGCAGATTAAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCACAACAAGAAGAAGATCTTATAATCAGTCTTCATGAGCTCCTTGGAAATAGGTGGGCTCAAATAGCGGCACAATTACCGGGAAGAACAGATAATGAAATAAAGAACTTTTGGAATTCATGTTTAAAGAAGAAGCTTATGAAGCAAGGGATTGATCCAGCTACACACAAACCTCATACAGAAGCATATGTTAAGGAAGAGAACAAAACCACAGAAACAATAACAGGAACAACAACACCTATGCAAATACCATCAGTTACATCACAAGATTCATCGTTTCTATTAAGCGATTCGAATTACTATGAGAATAATGGTCTAAGTCATCTAACAGAACCTTCAAGAGAAATTTTCAGTACAAAATCAGCATTGGACCCTTTGTTCTGCTATGATTTCCAATCTAATTATAACTTACCTCTCATTAATTATCAAAGCCAAAGCCAAAGCCAATTTGGACTTAATTCAAGCTATGGATTCACTTCAATGCCGAGTTTAACAAATTCGGATCACGCAAATATGTCGGTAACAGAGTTTTCAGACAACAATTCAGCTTCAAAAATCAGCTCATTGTTCATGAATGATCAAGTGAAAGAAAGTAATTCAAGCAATAGCTCAAATATGAGTACTATTTATCCATCTCAGATAAGAACTACTATGATGGAAAATAATAATGCAGGGTTTTCTTGGGATGGATCAGAGAATAAATTGGACCCTTTGTTTCAGTTTCAAATCAATGCTATAAAATCTGAAGAATTTGGAACAAGTTCATGGGAAGAAGGACAAATTCAAACTCAAAATTCAATAGATTTCAGTAGCTATCCTTTAACATCACTTTCACAAGATTTAACAGAACCAAATTTTGATGCATTCCATCATATATGA 1089 0.3471 MGRHSCCLKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHELLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPHTEAYVKEENKTTETITGTTTPMQIPSVTSQDSSFLLSDSNYYENNGLSHLTEPSREIFSTKSALDPLFCYDFQSNYNLPLINYQSQSQSQFGLNSSYGFTSMPSLTNSDHANMSVTEFSDNNSASKISSLFMNDQVKESNSSNSSNMSTIYPSQIRTTMMENNNAGFSWDGSENKLDPLFQFQINAIKSEEFGTSSWEEGQIQTQNSIDFSSYPLTSLSQDLTEPNFDAFHHI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02883 362 Gene3D - 68 143 - -
Trre16g02883 362 CDD SANT 70 109 IPR001005 -
Trre16g02883 362 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre16g02883 362 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre16g02883 362 PANTHER MYB DOMAIN PROTEIN 55 1 290 - -
Trre16g02883 362 CDD SANT 17 61 IPR001005 -
Trre16g02883 362 Gene3D - 11 67 - -
Trre16g02883 362 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre16g02883 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre16g02883 362 SMART sant 66 114 IPR001005 -
Trre16g02883 362 SMART sant 13 63 IPR001005 -
Trre16g02883 362 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre16g02883 362 FunFam Transcription factor MYB86 69 137 - -
Trre16g02883 362 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre16g02883 362 FunFam MYB transcription factor 11 67 - -
Trre16g02883 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02883 Trre-Chr16 24579841 24581322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02883 1 140 MYB Transcription Factor Family AT4G01680 80.000 1.64e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g02883 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02883 K09422 - gmx:100811140 519.235