Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02879 ATGGCATCATCATCATCATCATCATCCAGCTCTTACAATTCACCATGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCATGCCAGGATGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCTCAAAAATTTGCAAACGTTCACAAAATATTTGGTGCTAGCAATGTCACAAAGCTTCTCAACGAACTCCTCCCTCAACAAAGGGAAGATGCAGTGAACTCACTTGCCTATGAAGCAGAAGCAAGAGTGAGAGACCCAGTTTATGGCTGTGTAGGTGCTATTTCTTTCCTCCAAAAACAAGTTCAGAGGCTTCAAAAGGAACTTGATGCTGCTAACACTGATCTTCTTCGCTATTCCCTCACTGATCATATCCCTCCGGCGCCAACTTCGCTTTCTGTGCCTCCAGTAATGGTATCAGTTCAACAAATTCCACAAAGATCACCCTTAAGTCCAAGAAATGAAGGAGGTGGATTTTTTGGACAGTCTCCAAATACTAACAATTATTCTTTTCCATATTCTCTTCCTTGGACTGATACTTCCTCTGAGGATATGAGTGAGGGTGGAGGAGTAGGAGGAGGAGGAAATCATTAA 591 0.4298 MASSSSSSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQKQVQRLQKELDAANTDLLRYSLTDHIPPAPTSLSVPPVMVSVQQIPQRSPLSPRNEGGGFFGQSPNTNNYSFPYSLPWTDTSSEDMSEGGGVGGGGNH 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02879 196 MobiDBLite consensus disorder prediction 142 196 - -
Trre16g02879 196 MobiDBLite consensus disorder prediction 157 184 - -
Trre16g02879 196 Pfam Lateral organ boundaries (LOB) domain 15 111 IPR004883 -
Trre16g02879 196 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Trre16g02879 196 Coils Coil 94 121 - -
Trre16g02879 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02879 Trre-Chr16 24521468 24522058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02879 6 178 AS2 family AT5G63090 67.045 1.28e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g02879 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02879 - - mtr:25493732 303.138