Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02869 ATGCCTGTAAATCCATGGACCCTTTTTTTCTTATTCTTTTTCCTTTTACTTCCACACCATTCTTTTCTATCTTTTGCAGTAAACCCACAAGGGGAAGCTCTTCTTTCATGGAAGAGAACCTTGAATGGATCCTTAGAGATATTGAGTAATTGGGACCCAATTCAAGATACACCATGTAGCTGGTTTGGAGTGAGTTGCAACATGAAGAACCAAGTAGTACAATTGGATCTGAGATATGTGGATTTGCTTGGGAAACTTCCAACAAATTTCACTTCATTGTTCTCCATGACTAGTCTTATCTTAACCGGAACGAACCTCACCGGTTCGATCCCAAAAGAACTAGGCAATCTTTTTGAACTCAGTTACTTGGACTTGAGTGACAATGCATTGAGTGGCGAAATTCCGAGTGAGCTCTGCTACTTGCCCAAACTCGAGGAACTTCATTTGAACTCGAACGAGCTTGTGGGGTCGATACCGATCGAAATTGGGAGCCTCATAAAGTTAACAAAGCTGATGTTATATGACAATCAGCTTAGCGGCAAAATTCCGAACACAATTGGCAACATGAGGAATCTTCAAGTGATAAGAGCTGGTGGAAACAAGAATCTAGAAGGACCTTTACCACAAGAAATTGGAAACTGTTCCAATTTGATCATGTTAGGATTAGCAGAAACAAGTATCTCTGGTATCATTCCACCAACAATTGGACTATTGAAGAAACTAGAAACATTGGCAATTTACACTTCACTCCTCTCTGGCCAAATTCCACCGGAAATCGGTGACTGCACAAATCTTCAAAACATTTACCTTTATGAAAACTCACTCACAGGTTCCATTCCAACCAAATTAGGCAACCTTAAGAATCTCAAAAACCTGTTACTCTGGCAGAACAGCTTAGTTGGGACCATTCCCCAAGAGATTGGGAACTGTAACCAATTATCAGTGATTGACGCGTCAATGAATTCCATAACAGGAAGCATTCCAAAAACATTTGGGAATTTAACTTTACTGCAAGAACTTCAACTGAGTGTGAACCAAATTTCTGGCGAAATTCCTGCAGAATTAGGGAACTGTCATCAACTAACTCACGTGGAGCTCGATAACAACCTTATAACCGGTACAATACCTTCCGAATTAGGAAACCTTGGGAATCTAACATTGTTGTTTTTGTGGCACAATAGGTTACAAGGTAATATACCTTCATCTCTTTCTAATTGTGAAAACCTTGAAGCTATTGATCTGTCACAAAATGGATTAACAGGTCCAATACCAAAAGGTATATTCGAGCTCAAGAATCTCAACAAGCTTTTGCTTCTTTCGAATAATCTCTCTGGTAAAATTCCTTCTCAGATTGGAAATTGTTCTTCTCTTATTCGCTTTCGAGCGAATAACAATAACATTACTGGCACCGTTCCTTCCGAGATTGGGAATCTTAAGAATTTGAATTTCCTTGACTTAGGGAGCAATAAAATTGAAGGGGTTATACCAGAGGAAATCTCCGGCTGCCGGAATCTTACCTTTTTGGACATGCATTCCAATTCCATTGCCGGAAGTTTGCCGGAGAGTCTGAGTCAGCTTGTTTCTCTTCAATTTCTTGATGTCTCCGATAACATGATCGAAGGTGTATTAAGCCCTGCTCTCGGTTCTCTCGCCGCTCTCACCAAACTGATTCTCCGGAAGAATCGAATCTCCGGTTTGATTCCGATGAAACTCGGTTCATGTGTCAAGTTACAGTTGCTGGACCTCAGCAGTAATCAATTCTCCGGTGAAATCCCCGGCAGCATCGGAGACATTCCGGCGCTGGAAATAGCTTTGAATCTGAGCACGAACCAACTCACCGGCGAGATTCCTAGGGAGTTTTCAGGTTTAACGAAGCTCGGAGTACTTGACCTATCTCACAATGTTCTCGCCGGAAACCTAGATTATCTCGCCGGATTAGAAAATCTCGTGGTTCTCAATATCTCAAACAACAAATTCTCCGGTCACGTTCCGAACACACCGTTCTTCGAGAAGCTTCCTCTAAACGTTCTCTCAGGGAATCCTTCATTATGCTTCGCCGGCAATCAGTGCGCTGGCGGTGGTGGCGGAAAATCAGGTCGCCGTGCCAGGGAAGCGCGCGTGGTGATGATCGTTCTTCTTTGCGTCGCGTGCGTTTTACTCATGGCGGCGCTGTACGTTGTCGTCGCAGCAAAACGACGCGGGGACCAAGAAAATGACGTGGAGCTAAATGGAAAAGACAGCGACGTGGACATGGTTCCACCATGGGAGGTGACACTGTACCAGAAACTCGATCTGTCAATATCCGACGTGGCAAAATGCATCTCTGCTGGCAACATAATCGGCCACGGCCGGTCGGGCGTCGTTTATAAAGTTACCATGCCAACAACGGGTTTAACCATTGCGGTTAAAAAGTTTCGAACGTCAGAGAAATTCTCAGCATCGTCATTTTCGTCAGAGATTGCCACGCTAGCAAGAATCCGACACCGAAATATTGTTCGGTTATTGGGGTGGGGTGCAAACCGGAGGACAAAGTTGTTGTTTTATGATTTTTTACCTAATGGTAATTTGGATGCCATGTTACACGAGGGGTGTACGGGATTAGCCGTTGAGTGGGAGACAAGACTTAAAATAGCTTTGGGAGTTGCTGAGGGTTTGGCGTATTTGCACCACGATTGTGTTCCTGCTATCTTGCACCGGGATGTTAAGGCGCAAAATATTTTGTTAGGAGATAGATATGAAGCGTGTTTGGCTGATTTTGGATTTGCTCGTTTTGTTGAAGAACCTCGCTCTTCATTTTCCGTTAATCCTCAGTTTGCAGGTTCTTATGGCTACATTGCTCCCGAGTATGCTTGTATGCTAAAAATAACAGAGAAAAGTGATGTATACAGCTTTGGTGTGGTCCTACTAGAGATAATAACAGGGAAAAGACCAGTTGATCCTTCATTCCCTAATGAAATACATGTTATTCAATGGGTTAGGGAGCATTTAAAGAGTAAGAAGGACCCAATTGAGGTTATTGATTCCAAGCTTCAAGGTCATCCAGATACACAAATACAAGAGATGTTACAAGCACTTGGTATCGCTTTATTGTGTACGAGTAATCGTGCTGACGATCGGCCCACCATGAAGGATGTTGCTGCATTATTGAGAGAAATTCAACATGACACTACATCAGGTGCTGAACCCCACAAGCCTAAAAGATCTGAAGCTTCGTCGTATTCTTCATCTTCGGTGACCCCGGCTCAGTTGTTGTTTTTACAATCCAATTCACATTCCTCATCTATTTCCTACTCCTCTTCCTCAGCCGCGGCAGCCTACCATTCCCCAAGGATGAATTCGACATAA 3345 0.4326 MPVNPWTLFFLFFFLLLPHHSFLSFAVNPQGEALLSWKRTLNGSLEILSNWDPIQDTPCSWFGVSCNMKNQVVQLDLRYVDLLGKLPTNFTSLFSMTSLILTGTNLTGSIPKELGNLFELSYLDLSDNALSGEIPSELCYLPKLEELHLNSNELVGSIPIEIGSLIKLTKLMLYDNQLSGKIPNTIGNMRNLQVIRAGGNKNLEGPLPQEIGNCSNLIMLGLAETSISGIIPPTIGLLKKLETLAIYTSLLSGQIPPEIGDCTNLQNIYLYENSLTGSIPTKLGNLKNLKNLLLWQNSLVGTIPQEIGNCNQLSVIDASMNSITGSIPKTFGNLTLLQELQLSVNQISGEIPAELGNCHQLTHVELDNNLITGTIPSELGNLGNLTLLFLWHNRLQGNIPSSLSNCENLEAIDLSQNGLTGPIPKGIFELKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANNNNITGTVPSEIGNLKNLNFLDLGSNKIEGVIPEEISGCRNLTFLDMHSNSIAGSLPESLSQLVSLQFLDVSDNMIEGVLSPALGSLAALTKLILRKNRISGLIPMKLGSCVKLQLLDLSSNQFSGEIPGSIGDIPALEIALNLSTNQLTGEIPREFSGLTKLGVLDLSHNVLAGNLDYLAGLENLVVLNISNNKFSGHVPNTPFFEKLPLNVLSGNPSLCFAGNQCAGGGGGKSGRRAREARVVMIVLLCVACVLLMAALYVVVAAKRRGDQENDVELNGKDSDVDMVPPWEVTLYQKLDLSISDVAKCISAGNIIGHGRSGVVYKVTMPTTGLTIAVKKFRTSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDFLPNGNLDAMLHEGCTGLAVEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKAQNILLGDRYEACLADFGFARFVEEPRSSFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPNEIHVIQWVREHLKSKKDPIEVIDSKLQGHPDTQIQEMLQALGIALLCTSNRADDRPTMKDVAALLREIQHDTTSGAEPHKPKRSEASSYSSSSVTPAQLLFLQSNSHSSSISYSSSSAAAAYHSPRMNST 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02869 1114 SUPERFAMILY L domain-like 255 541 - -
Trre16g02869 1114 Pfam Leucine rich repeat 463 515 IPR001611 GO:0005515
Trre16g02869 1114 Gene3D Ribonuclease Inhibitor 220 326 IPR032675 -
Trre16g02869 1114 Gene3D Ribonuclease Inhibitor 327 424 IPR032675 -
Trre16g02869 1114 SUPERFAMILY L domain-like 27 294 - -
Trre16g02869 1114 MobiDBLite consensus disorder prediction 1092 1114 - -
Trre16g02869 1114 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 515 - -
Trre16g02869 1114 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Trre16g02869 1114 MobiDBLite consensus disorder prediction 1054 1068 - -
Trre16g02869 1114 Gene3D Ribonuclease Inhibitor 140 219 IPR032675 -
Trre16g02869 1114 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Trre16g02869 1114 SUPERFAMILY L domain-like 471 682 - -
Trre16g02869 1114 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Trre16g02869 1114 Gene3D Phosphorylase Kinase; domain 1 755 850 - -
Trre16g02869 1114 SUPERFAMILY Protein kinase-like (PK-like) 759 1050 IPR011009 -
Trre16g02869 1114 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Trre16g02869 1114 ProSiteProfiles Protein kinase domain profile. 774 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02869 1114 SMART LRR_sd22_2 117 149 - -
Trre16g02869 1114 SMART LRR_sd22_2 623 648 - -
Trre16g02869 1114 SMART LRR_sd22_2 526 544 - -
Trre16g02869 1114 SMART LRR_sd22_2 262 288 - -
Trre16g02869 1114 SMART LRR_sd22_2 382 411 - -
Trre16g02869 1114 SMART LRR_sd22_2 478 501 - -
Trre16g02869 1114 PRINTS Leucine-rich repeat signature 120 133 - -
Trre16g02869 1114 PRINTS Leucine-rich repeat signature 623 636 - -
Trre16g02869 1114 Gene3D Ribonuclease Inhibitor 425 691 IPR032675 -
Trre16g02869 1114 MobiDBLite consensus disorder prediction 1054 1075 - -
Trre16g02869 1114 Pfam Protein kinase domain 777 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02869 1114 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Trre16g02869 1114 Gene3D Transferase(Phosphotransferase) domain 1 851 1074 - -
Trre16g02869 1114 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 516 591 - -
Trre16g02869 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Trre16g02869 1114 SMART LRR_typ_2 646 679 IPR003591 -
Trre16g02869 1114 SMART LRR_typ_2 382 406 IPR003591 -
Trre16g02869 1114 SMART LRR_typ_2 430 454 IPR003591 -
Trre16g02869 1114 SMART LRR_typ_2 334 358 IPR003591 -
Trre16g02869 1114 SMART LRR_typ_2 478 502 IPR003591 -
Trre16g02869 1114 SMART LRR_typ_2 526 549 IPR003591 -
Trre16g02869 1114 SMART LRR_typ_2 165 189 IPR003591 -
Trre16g02869 1114 SMART LRR_typ_2 286 310 IPR003591 -
Trre16g02869 1114 SMART LRR_typ_2 117 141 IPR003591 -
Trre16g02869 1114 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Trre16g02869 1114 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 1050 - -
Trre16g02869 1114 SMART serkin_6 774 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02869 1114 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1067 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02869 Trre-Chr16 24301706 24305729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02869 25 1102 Receptor kinase-like Gene Family AT5G56040 53.959 0.0 1130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre16g02869 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02869 - - gmx:100778064 1745.71