Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02851 ATGCAAAATTTGAACATCTTATGGGGAATGATCATATTCATAATACCGTGGTATTTGTCACGTGTGGCGTGCTTCAATGGTGGGATACATGAAGCCGGTCTGACTTGTGATTCTTATCAGTACCCTGCAGATGATGATGATAGCGACAACAAGTTAATGCAAAATTTGATGGTTGTAATGGACGCCGTTTCATTTCAGGTGAAAGAACACGGTTGGGGAGCACAAACATTAGTTGGTAGAATTTACCTTAATGGTTGCTTCCTTCGTTATGACAACTACACTTTCTTTGAAGAGAGCGTGGACGTCACACATGACACAAACATGTGTGGGTCTACGCAAAGGGGAGAGCCGACAGTAGATCCCTCACGTGTTACGTCAGTGATTTTGAATGTGAGTAAAGGTGAACATAGGTTTGCAGTGGACGAGGAAGGTGGTGTGTTTGCGTTTGCGCAATGTTGGGAGACAGTCGATAAATGGAGTTGTCAAAGATGTTTGAGAGAAGCGGGGAAAAGAGTGCAGGAATGTGTTCCTAGTGCCGAGGGTAAAAGCTTGTTTACTGGTTGTTTTATGAGGTATTCAACGCGTAAATTCTACAACGACGTTGTTGTGCTAAACGATACATGGATTACTCCTCCCACTCAACAAGAAAAGCATGAGTGGATAATCCTTGCATGTGTAATATCAGCAATTGTAGTCATCTTCTTAATTATCATCCCTAGTGTATTTCTGAGCAAGAACAGAAAAATACCACATGAAAAAAAGAACAAGTTTGGCGCATCACCTAGTTTTGCCAACGTAGCTGGTTTTAGTTTTAGGTACGATGTGCTTGAGAAGGCAACTGGTAATTTTGATCCTACAAACAGATTAGGCATGCATGGAGAAGAAAATCATGGTTCTGTGTACAAAGCAATACTCCCATCGGGAAGAACCGTTGCTGTTAAACGTTTGTTTTTCGATACACGACAATGGACAGATGTGTTATTCAATGAGATCAATTTGATTAATGGAATTCAACATAAGAATGTGGTGAAACTTTTGGGGTGTAGTGTTGATGGCCCCGAAAGCCTCTTGGTTTATGAATTTCTTCCCAATAAAAGTCTTGATCAAATCCTTTTCGATAAGGATTCAGAAAATGTTCTAGCTTGGGAGAAACGGTTTCAAATCATATGTGGGATAGCTGAGGGTTTAGCATATCTTCATGAAGGATCTGGAACAAAGATTATTCACAGAGACATAAAGTCCAGCAACATTTTGCTTGATGAGGCTTTAAATCCAAAAATTGTTGATTTTGGTCTTGCTCTTTGTGTTGCTGAAAACAAATCTCATATTAACACCACTAAAATTGCAAAGACATTGGGACATATGGCTCCTGAGTGTATAGACCGAGGACAACTGACAGAGAAGGCAGATATATATGCTTTTGGTACGATGGTTATCGAAATTATCTGTGGTAAAAAGAATGGTGTTTTCACACAAGGGTCGGATTCATTACTCCAATATGTATGGAAGAATTACATTGCAAACAATATTACAATATCAGTTGATCATGCTCTACATGGAAATTTTGAAGAAGAAGAGGCATCAAATGCTCTTCAAGCTTCCCTTCTTTGTACACAATCTTCTCCTAATCTTAGACCATCCATGTCAGAAGTAGTTCAAATGCTAACAAAAAAAGACTACATTATTCCCATCCCAAAGGAACAACCATTCCTTAATTATACTAAACACCGAACCTTAGCTTCCACGATGAGCCTTATGTCAAATGGACTTACAAGTACAAGATCATCTTTTCATAGCACCACTAGTTCTTTACATCCAGGTGAAGATGCAACATTGTTAGAGAATCCTTTTTCTTCTTCTGCTAGGTTCAACACTTCAGAGAGCCCTGATTCAAATATCCAAACAAACATTGTGGTACCTCAGCCAAGGTAG 1932 0.3934 MQNLNILWGMIIFIIPWYLSRVACFNGGIHEAGLTCDSYQYPADDDDSDNKLMQNLMVVMDAVSFQVKEHGWGAQTLVGRIYLNGCFLRYDNYTFFEESVDVTHDTNMCGSTQRGEPTVDPSRVTSVILNVSKGEHRFAVDEEGGVFAFAQCWETVDKWSCQRCLREAGKRVQECVPSAEGKSLFTGCFMRYSTRKFYNDVVVLNDTWITPPTQQEKHEWIILACVISAIVVIFLIIIPSVFLSKNRKIPHEKKNKFGASPSFANVAGFSFRYDVLEKATGNFDPTNRLGMHGEENHGSVYKAILPSGRTVAVKRLFFDTRQWTDVLFNEINLINGIQHKNVVKLLGCSVDGPESLLVYEFLPNKSLDQILFDKDSENVLAWEKRFQIICGIAEGLAYLHEGSGTKIIHRDIKSSNILLDEALNPKIVDFGLALCVAENKSHINTTKIAKTLGHMAPECIDRGQLTEKADIYAFGTMVIEIICGKKNGVFTQGSDSLLQYVWKNYIANNITISVDHALHGNFEEEEASNALQASLLCTQSSPNLRPSMSEVVQMLTKKDYIIPIPKEQPFLNYTKHRTLASTMSLMSNGLTSTRSSFHSTTSSLHPGEDATLLENPFSSSARFNTSESPDSNIQTNIVVPQPR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02851 643 SUPERFAMILY Protein kinase-like (PK-like) 270 588 IPR011009 -
Trre16g02851 643 ProSiteProfiles Protein kinase domain profile. 286 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02851 643 SMART serkin_6 286 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02851 643 Gene3D - 122 197 IPR038408 -
Trre16g02851 643 Gene3D Transferase(Phosphotransferase) domain 1 362 562 - -
Trre16g02851 643 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 63 589 - -
Trre16g02851 643 ProSiteProfiles Gnk2-homologous domain profile. 90 197 IPR002902 -
Trre16g02851 643 Pfam Protein kinase domain 293 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02851 643 Pfam Salt stress response/antifungal 138 194 IPR002902 -
Trre16g02851 643 Gene3D Phosphorylase Kinase; domain 1 262 361 - -
Trre16g02851 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Trre16g02851 643 MobiDBLite consensus disorder prediction 621 643 - -
Trre16g02851 643 FunFam Cysteine-rich receptor-like protein kinase 2 362 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02851 Trre-Chr16 24161859 24164748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02851 79 572 Receptor kinase-like Gene Family AT1G70520 40.430 5.19e-122 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02851 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02851 - - mtr:25493752 821.231