Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02841 ATGAAACAAGAATTCCATGTACCTCAATGTCAACAAGGGAAATTGGTGTGCCATGTAACTGCGGATAACCTCTCAACAGATTTGTGGGCATGGAGAAAATACGGACAAAAATCTATTAAAGGTTCTCCATATCCAAGGAACTATTATAGATGTAGTAGTTCCAAAGGTTGTACCGCACGAAAGCAAGTTGAAAGGAGCAACACCAAAACGGACATGTTTATTGTGACGTATATCGGAGATCACAACCACCCTAGACCCACTCATCGGAACTCGCTCGCTGGAAGAACACTAACCAAGTCTCCGGTGATACAACCATCCACTTCAATTTCTTGTCAATCCAACATCGTGACATCTTGCTCCTCCTCTTTAGCGCCAAACTCTTTTAGTGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGCAAGAGGAAGAGGAAGAAGACATTGACATGGAAATTGAAACTGATGAAGAAGGTGAAGAAGTTATCCATCTTGAGCAGGTGGCCGAATTAGATGAGGTTGAAGCGTCATTGTCCGGAGCCTTTGGAAGAAGAAATACAAGGGCTGGATGTTCGGCTCCATGTATTAGCCTCAAATTAACTGAAATTGTTGACATAGTGAGAAAGGAAGACGATGATGGTGAGGTTGATTCGACTATACGAAGTTGGCTTGAGGACACTGTTAATGGATATAAAGTGGATGCAGAATTCATGCCGATATTAAGTAAAATTATTGACAGGCATGGAGATATTGCAAAGAATTGCAAAGGGTCAATGGAATACCGTTCAATGTTTTTGGATAGGATTTGTAGGATTGTATACGAGTTGGACAAAAAGAATGTTACCAACATCAAAGACAATGAATTGGAAAAGCAGATTGTTCTAGTTGATGACATTAAAACTAACGATGTTGAGGTTAACTGGCTTCACACGAGGCTAACTGAGATACGTGTGGCAAGACAGTTTCTTGAGCAACTTGGCCCGATGAAAGATAGATTCGACAGCACTAGGGAGTCTATTGAAATTGCTGAGAGCACATTGAAAGCATTTGAAGACGAGAAGATGGAAGCGTCAGAGAAGTTGAAGGAAGCATCAAAGAACTTCGAAGAAATATGTAAAAAGGAGGCTGATTGGAAAGAGAAATTAGCTAGAAGTCCGGATAAGTCTATCGAGATATCTCAAACAATAGAAAATGCTACATCTATAGTCAAGCAATTTCTCAATTGCTCACTCATTAATGATTTGCTTTAG 1266 0.4044 MKQEFHVPQCQQGKLVCHVTADNLSTDLWAWRKYGQKSIKGSPYPRNYYRCSSSKGCTARKQVERSNTKTDMFIVTYIGDHNHPRPTHRNSLAGRTLTKSPVIQPSTSISCQSNIVTSCSSSLAPNSFSEEEEEEEEEEEEEEEEEQEEEEEDIDMEIETDEEGEEVIHLEQVAELDEVEASLSGAFGRRNTRAGCSAPCISLKLTEIVDIVRKEDDDGEVDSTIRSWLEDTVNGYKVDAEFMPILSKIIDRHGDIAKNCKGSMEYRSMFLDRICRIVYELDKKNVTNIKDNELEKQIVLVDDIKTNDVEVNWLHTRLTEIRVARQFLEQLGPMKDRFDSTRESIEIAESTLKAFEDEKMEASEKLKEASKNFEEICKKEADWKEKLARSPDKSIEISQTIENATSIVKQFLNCSLINDLL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02841 421 Coils Coil 126 160 - -
Trre16g02841 421 SUPERFAMILY WRKY DNA-binding domain 20 86 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g02841 421 Coils Coil 338 379 - -
Trre16g02841 421 MobiDBLite consensus disorder prediction 121 155 - -
Trre16g02841 421 ProSiteProfiles WRKY domain profile. 20 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g02841 421 MobiDBLite consensus disorder prediction 128 155 - -
Trre16g02841 421 SMART WRKY_cls 25 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g02841 421 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 180 IPR044810 GO:0003700
Trre16g02841 421 Gene3D WRKY domain 12 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g02841 421 Pfam WRKY DNA -binding domain 27 84 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g02841 421 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 231 411 IPR007942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02841 Trre-Chr16 24109465 24111666 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02841 11 108 WRKY Transcription Factor Family AT5G52830 73.529 2.51e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g02841 PEARLI-4 5.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02841 - - tpra:123917051 246.899