Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02837 ATGCAGGCTACCCTTTTACCTCTCACCCCTTCCCTCTCTCTCTACAAATCTCAATCCTCTCTCTCTTCATCTCTTTCTTCCACTTTCAATCCTTCTTTCTCTTCCTCTTCTTTCCCATCATTATGGAAATTCCCTCTTGTTTCTTCTTCTTCTTCAGAACTAATCTCCTTGACACCCCTCCATTCCTCCAACCATTTACAAACCAAAGCAACAACCACCGCGGCCGCCTCCTCCTCCTCCTCCTCCTCAGACAGCAGCAGTCTATTCAAAGCTCTAGAGCTTGGAATCCTTTTTTGCCTATGGTTCACCTTTAACATCTACTTTAATATCTACAACAAACAGGTCTTGAAGGTTTATCATTTACCTGTAACACTCACTGCGGTTCAATTTGCTATTGGGACACTTCTTGTAGCATTCATGTGGGGTCTTAATCTTTATAAAAGGCCAAAACTCACTTCTTCACAGCTTTTAGCAATATTTCCATTGGCTTTGGTACATACATTAGGGAACCTTTTCACTAATATGAGTCTTGGAATGGTTGCTGTCTCTTTTACACATACTGTTAAATCAATGGAGCCTTTCTTTTCTGTCCTTCTGTCTTCTATGTTCCTTGGAGAGATGCCTACTGCATGGGTGGTTGGTTCCCTTGTGCCTATTGCTGGTGGTGTGGCGCTGGCATCTGCTACGGAGGCCTCTTTCAATTGGGTTGGGTTTTTGAGTGCAATGGCTTCCAATTTGACGAATCAATCTCGTAATGTTCTTAGCAAAAAACTCATGGTTAACAAGGAGGAATCCGTGGACAACATAACACTCTTCTCAATAATAACAGTCATGTCATTCTTCCTATCATTACCTCTAGCTATCTTCATGGAGGGTGTCAAATTTACCCCTACTTACCTTCAATCCGCAGGATTAGATGTTCAACAAGTGTATATAAGATCTCTTCTTGCTGCACTATGTTTCCACGCGTATCAGCAAGTTGCTTATATGATACTGCAGAGGGTATCACCTGTTACACATTCAGTAGCAAACTGTCTGAAACGTGTGATAGTTATTGTGAGCTCCGTAATTTTTTTCCAAACACCTGTCTCGCCAATTAATGCATTAGGAACTGGTATAGCTATTTCTGGTGTTTTCCTATATTCCAGGGTGAACCGAATTAAGCCTAAGACAGATTAA 1179 0.4156 MQATLLPLTPSLSLYKSQSSLSSSLSSTFNPSFSSSSFPSLWKFPLVSSSSSELISLTPLHSSNHLQTKATTTAAASSSSSSSDSSSLFKALELGILFCLWFTFNIYFNIYNKQVLKVYHLPVTLTAVQFAIGTLLVAFMWGLNLYKRPKLTSSQLLAIFPLALVHTLGNLFTNMSLGMVAVSFTHTVKSMEPFFSVLLSSMFLGEMPTAWVVGSLVPIAGGVALASATEASFNWVGFLSAMASNLTNQSRNVLSKKLMVNKEESVDNITLFSIITVMSFFLSLPLAIFMEGVKFTPTYLQSAGLDVQQVYIRSLLAALCFHAYQQVAYMILQRVSPVTHSVANCLKRVIVIVSSVIFFQTPVSPINALGTGIAISGVFLYSRVNRIKPKTD 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02837 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 138 227 - -
Trre16g02837 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 306 385 - -
Trre16g02837 392 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 92 390 IPR004696 GO:0016020|GO:0022857|GO:0055085
Trre16g02837 392 PANTHER SOLUTE CARRIER FAMILY 35 94 385 - -
Trre16g02837 392 Pfam Triose-phosphate Transporter family 93 382 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02837 Trre-Chr16 24083323 24086191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02837 8 390 Antiporters AT5G33320 62.907 1.19e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02837 K15283 - gmx:100780925 498.434