Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02836 ATGTTTCCTTCGATTCCTGTTACACTTAATTCTCTCATGGTTCTTGAGACGAATCTTAGAGAAAACTATGCCTCACAATCACAACCAATACATTTGCAAGAAAACTACTTAAAGCCAAGGATGAAAGATGAGTTAATACCTTTTGGTGCTCATTCCTCGCAGGGTAATTTCTTGCAAGATTTTCACCATATTGATCAATTTCATGTGCATGGCTCCTCATCCTCCAATCAAGTTTTTGGGGTCCAAACACAAAATTTTGATCCTTTTGGTAATGCAGAATGTGCAAATACAAATTTTGAAGTTTATGATGGAAAGCCTTTTGGTGAGAATAATATTAATGGTAGTGAACATGCTCAACTTATTGACAATTTTCAATATGATGGTTATAGTTTGAATATCCCTAGAAGGAATCATATTGATCTTATGATTGAAAACCATAGTTATTTTCCCTTTAATAATCCTTCAGAAACCAAGCCATTGAATTATGTTGTACCAGATGATGAAGTTTCAAGCATAACACCAACAAATTATTATCAAAGAGCTGGGTTGAATAGAAACAACAGGTTATTATCTCCTACCACAAGAAGAGCATTTAAAGCAAGGAAGAAATCAAACATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAAATGGTGGAACAATATGGAATGAGGAAGTGGTCTCATATTGCTCAGAAGTTACCTGGAAGAATAGGGAAACAGTGCAGAGAAAGATGGCATAACCATTTAAGGCCAGATATTAAGAAAGACATATGGACTGATGAAGAGGATAAGATATTGATCCAAGCTCATTCAGAGATAGGAAATAAATGGGCAGAGATCGCGAAAAGATTGCCAGGAAGAACTGAGAACTCAATTAAAAACCATTGGAACGCAACAAAGAGAAGGCAATATTCTAAAAGAAAATGTCGCTCAAAGTACCCTAGAGGCACTCTTCTGCAGGACTATATCAAAAGCTTGAATTTGGACCAAAATCCACCAAGAGACTTTCGAAAAAGATCTTCAGCTAATGCAAAGAAAACAGTTACTTGTAGCACAAGCAAAGCAGCAACACAACAGATTCCACAGCCACAGATTGCAAATGAGTTTTGTCCCAATGACCGACCGGTGCCAAACTACGAGTTTAATGATTTTTGTTTGGATGATAATTTGTTTGAAGAAGGCTGTGGTATTGATTCTCTGTTAGATGAAATGTCAAGTGTTCCTACTACGGATGAGAAAGATGTCGAAGAAAAACAACAATGTGATAAGGAAGGCGTGCAAGTTAATCTTGAAGAGCAACAGTTTGAGACACAAGTTGAAATTAAGAAGGAGTTGGATTTGGTGGAGATGATCTCTCAGGTTAATCAAAGTATTAATTGA 1395 0.3656 MFPSIPVTLNSLMVLETNLRENYASQSQPIHLQENYLKPRMKDELIPFGAHSSQGNFLQDFHHIDQFHVHGSSSSNQVFGVQTQNFDPFGNAECANTNFEVYDGKPFGENNINGSEHAQLIDNFQYDGYSLNIPRRNHIDLMIENHSYFPFNNPSETKPLNYVVPDDEVSSITPTNYYQRAGLNRNNRLLSPTTRRAFKARKKSNIVKGQWTVDEDRLLIQMVEQYGMRKWSHIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQDYIKSLNLDQNPPRDFRKRSSANAKKTVTCSTSKAATQQIPQPQIANEFCPNDRPVPNYEFNDFCLDDNLFEEGCGIDSLLDEMSSVPTTDEKDVEEKQQCDKEGVQVNLEEQQFETQVEIKKELDLVEMISQVNQSIN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02836 464 PANTHER MYB PROTEIN-RELATED 180 364 - -
Trre16g02836 464 Pfam Myb-like DNA-binding domain 208 254 IPR001005 -
Trre16g02836 464 Pfam Myb-like DNA-binding domain 263 302 IPR001005 -
Trre16g02836 464 SUPERFAMILY Homeodomain-like 205 301 IPR009057 -
Trre16g02836 464 ProSiteProfiles Myb-like domain profile. 255 305 IPR001005 -
Trre16g02836 464 FunFam Transcriptional activator Myb isoform A 207 260 - -
Trre16g02836 464 CDD SANT 211 254 IPR001005 -
Trre16g02836 464 ProSiteProfiles Myb-like domain profile. 203 254 IPR001005 -
Trre16g02836 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 258 IPR017930 -
Trre16g02836 464 Gene3D - 207 260 - -
Trre16g02836 464 Gene3D - 261 322 - -
Trre16g02836 464 FunFam Transcription factor MYB119 261 325 - -
Trre16g02836 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 309 IPR017930 -
Trre16g02836 464 SMART sant 259 307 IPR001005 -
Trre16g02836 464 SMART sant 207 256 IPR001005 -
Trre16g02836 464 CDD SANT 263 305 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02836 Trre-Chr16 24078050 24079958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02836 21 409 MYB Transcription Factor Family AT4G18770 44.651 2.75e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g02836 Myb_DNA-binding 8.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02836 K09422 - gmx:100816653 594.734