Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02829 ATGGGTCGTCGCAAAATTCCGATTGCGAGGGTGAAAAACCCTGCCGCGAGGCAAGTTACATTCTCCAAGCGTCGAACAGGGTTATTCAACAAAGCAAATGAACTTGTGACCTTATGCGGGGCAGAAATTGCCATCATTGTGTTCTCCCCGGGAAATAGGCCTTATTCTTTTGGGCACCCGTGTGTTGAAGCTATTGCATCCAGGATTGTTGAACAAGAGCCGATTCCAAATGACGGCATAGAAAACTCATCTTCTGACATTGACGATCTGACCAAACAACTTGGCGATGTTTTGGCCAAAATAGATGAAGCTGAAAAGGGAGCTAAGCTCCATGACGAGATCCTAAAAGAATCCAAGGTGGTGCAATTCGCTCAACTTGAGAAATTAAGAGGGTCAATTATTGAGCTTAAGGATATGATAAAATCACGTATTTGTGATTTAGATACATCGCAATCTATGCTGCTTCTTGCAAAGGAGCCAATTATTTTGAATTAA 495 0.4263 MGRRKIPIARVKNPAARQVTFSKRRTGLFNKANELVTLCGAEIAIIVFSPGNRPYSFGHPCVEAIASRIVEQEPIPNDGIENSSSDIDDLTKQLGDVLAKIDEAEKGAKLHDEILKESKVVQFAQLEKLRGSIIELKDMIKSRICDLDTSQSMLLLAKEPIILN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02829 164 Coils Coil 87 107 - -
Trre16g02829 164 PANTHER MADS BOX PROTEIN 3 140 - -
Trre16g02829 164 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Trre16g02829 164 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Trre16g02829 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g02829 164 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g02829 164 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g02829 164 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g02829 164 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Trre16g02829 164 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre16g02829 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02829 Trre-Chr16 24004844 24005338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02829 1 151 Type I MADS-box Gene Family AT2G24840 35.928 1.47e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g02829 SRF-TF 8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02829 - - psat:127135568 200.29