Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02818 ATGGCTATCAGAGGCATCGATTTCAAGTGGTACGATGGATTTTTCCTTTCCATGCTCGCCACCAGCTTAGTTATTGTTGCAATTAATTGGAAGCGCTATCATTCTTGTACATACCCATTGCACATATGGATTGTGGTGGATTATACTGCTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAATGGGTTTGCTGCAGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGCATTGCTTCTTTATCCATTTCTTTGGTCCTGGACTATAATTGGTACCATATGGTTCAGAAGTGCCAAGAGCTGTTTGCCTGAAGAGGGACAGAAATGGGGATTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTTCTTTGCATTGCTTGCATGTCAGTGGGGAAGTGGTTGACTCGACGACAAGCACACTTAGTGCGTGCCCAACAGGGTATCCCCGTGTCTGAATATGGGATTTTGGTCGATATGATCCGCGTGCCGGACTGGGCATTTGAAGCTGCAGGCCAAGAAACAAGGGGCATGGGCCAAGATGCTGCAGCATATCAACCAGGACTTTACCTAACACCAGCTCAGAGAGAAGCAGTCGAAGCTTTAATTCAGGAACTCCCTAAGTTCATGTTAAAAGCTGTTCCTACTGATTGCAGTGAGTGCCCTATCTGCTTAGAAGAGTTCCGTGTTGGGAATGAGGTCCGTGGCTTGCCTTGTGCGCACAATTTTCATGTTGAATGCATTGACGAGTGGCTTAGACTGAATGTGAAATGTCCTCGGTGCCGTTGCTCGGTGTTTCCAAATCTCGATCTTAGTGCCCTATCCAATCTCCGTCCTGATTCTGAACGATCTTCTGCCAGTGTTGTGACAACAACTAGATATGTGAGAGGTCAACCTTCCAGTCAAAGTTACCTGTTAAGGTTACAGGGACTTCTTCGCCCGGTGCGTGCTGAAATTGCAGGGCCAGTTGGTGACACAGATAATGCTTTGCAAAATGCCGAGAACGGTGTTGTACCTATTATGCCACAAAATGCACCAAACAGAGTCCAGGTCTCTTCTGTGGAATGCATGCCTGTCAATCATTCCTCTCCACAAAGTTAG 1143 0.4619 MAIRGIDFKWYDGFFLSMLATSLVIVAINWKRYHSCTYPLHIWIVVDYTAVFVFRLLMFVDNGFAAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWSWTIIGTIWFRSAKSCLPEEGQKWGFLIWLLFSYCGLLCIACMSVGKWLTRRQAHLVRAQQGIPVSEYGILVDMIRVPDWAFEAAGQETRGMGQDAAAYQPGLYLTPAQREAVEALIQELPKFMLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRAEIAGPVGDTDNALQNAENGVVPIMPQNAPNRVQVSSVECMPVNHSSPQS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02818 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 281 IPR013083 -
Trre16g02818 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Trre16g02818 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Trre16g02818 380 Pfam Ring finger domain 234 276 IPR001841 -
Trre16g02818 380 SUPERFAMILY RING/U-box 217 284 - -
Trre16g02818 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Trre16g02818 380 SMART ring_2 235 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02818 Trre-Chr16 23901046 23905108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02818 58 362 C3H Transcription Factor Family AT3G47990 72.816 2.27e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02818 K16284 - gmx:100812016 708.368