Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02812 ATGAGTACTCATGTTTGTAATCAAAGGGATCGCCGCATCCTATCATTCCCAGCAGTTCATCCTTGTGAATCTATATCTTCAACAACACTAATCACTTCTCTAATCACTCTCTCACAAACCATATCAAATTTCCAACCTCAATTATTCACAACCCAAAAACAACTTCATTTCACTTTACAAAAAATTCTCTTCTTAATGCAAGATTGTACTCTAGAAGGTTCTAAGCTTCTATTGCTTGCGAAATCGCAACACGTGGCATCTCTTTTTCGTTCTCTTATTCGTGCAGTGTCTACTACTCTAGATGTTTTACCTTTACACAAGGTGGAAATTTGCTACGAAGTGAAAGAGTTTGTTGAATTAGTAGCAAAACAAGCCAGAAAAGCTAAATTTGAAGTTGACCCTAGTGATGAATTTGCCACCAAGAAACTTCATTTAGTTCTGCAACAATTCGAGAGAGGAATTGAACCAAATATTAATACCATGAATGAAGTTCTCGATTACTTAAGAATCAAAAGCTGGAATGATTGTGAAAGAGAAAACAAATTCTTAGAAGATGAGATAAGCTTGTTAGAGAATCGTGATTGTAACGAACGAGAAGTTCCGTTGCTGAGTAGCTTAGTTGGGTTTTTAAGCTACTGCAGAGTAGTGATATTTGAATCTCTTGATAGAAATTCTTCTGATGAACTCGAAGCTCGACGCAGCACGGAGATCATAACTATAATTACTTGTTTGAATCCAGAGGATTTTCGATGTCCAATTTCGCTTGAATTAATGACAGAACCAGTAACAGTTTCAACAGGACAAACCTATGATCGTGTTTCGATTCAAAAATGGCTTAAATCAGGAAACACAACATGTCCCAAAACAGGAAAGAATCTTAAGAATACAGAGTTAGTCCCAAACACAACACTGAAGAAACTTATCCAACAATTCTGCTTCGACAATGGTATATCTTACACCCGATTTTCTAACCGTAGCCGCGACATAACTAGGACAATTTTACCAGGTAGTTCTGCAGCAGCACATGCTATGCAGTTTCTTTCATGGTTTCTAACACGACAGCTCGTGTTTGGAACTGAGAAACAAAAGAACAAAGCAGCTTATGAGATTCGTTTGTTAACAAGGTCAAGTATTTTCAATAGAGCATGTTTGATTGAAGTTGGAACTGTTCCACCATTGTTGGAACTTTTAGCTACGGAAGATAAAACTACGCAAGAGAATGCTATCTCTGCTTTGATGAAGCTTTCAAAGCATGCAACTGGGCCTGAAAATATAATAGCCCATAACGGTTTAAAGCCCGTTGTTTATGTACTGAGAAACGGGCTTAGTCTTGAAGCCCGTCAAATTGCAGCTGCTATAATATTCTATCTTTGTTCCGTGAAAGAATATAGAAAAATCATAGGTGAAAATCATGATGTGATTCATGGTTTAGTGAAATTGGTTAAAGAAGGAACAGCCTGCGGGAAAAAGAACGCAGTTGTTGCGATTTTTGGACTTCTTTTACTTCCTAGGAATCATCAACGCGTGCTTGAATCCGGTGTTGTTCACGCGCTTGTTTCTATTTTGGCTTCTTCTGATAAGGAAGAACTTGTTACTGAAGCTTTGGCTGTTCTTGCTGCACTTGCTGAGAATTTTGATGGAGCGAATGCTGTTTTTGAAGCTTCTGCATTGTCTTTGATTATTGGGATGTTGAGATCTGCTACTTCGTGTGTCGGGAAGGAACATTGTGCTTCAATTTTGTTGTCGCTGAGTGTTAATGTTGGTGTGGATGTTGTAGGTGTTCTTGCTAAGGATGTTACACTTATGCCTTTGCTTTATTCGCTTCTTACTGATGGTAATTCTCATGCTGCTAAAAAAGCGCGTTTGCTTATTAAAGTTCTTCAAGATTTCAATGAAACAGCTAGTTCTCGATTGAAAGGTTCTTCAATTCTGCGCGAAATGAATGGGTTAGAACTTAGAAATTAG 1965 0.3791 MSTHVCNQRDRRILSFPAVHPCESISSTTLITSLITLSQTISNFQPQLFTTQKQLHFTLQKILFLMQDCTLEGSKLLLLAKSQHVASLFRSLIRAVSTTLDVLPLHKVEICYEVKEFVELVAKQARKAKFEVDPSDEFATKKLHLVLQQFERGIEPNINTMNEVLDYLRIKSWNDCERENKFLEDEISLLENRDCNEREVPLLSSLVGFLSYCRVVIFESLDRNSSDELEARRSTEIITIITCLNPEDFRCPISLELMTEPVTVSTGQTYDRVSIQKWLKSGNTTCPKTGKNLKNTELVPNTTLKKLIQQFCFDNGISYTRFSNRSRDITRTILPGSSAAAHAMQFLSWFLTRQLVFGTEKQKNKAAYEIRLLTRSSIFNRACLIEVGTVPPLLELLATEDKTTQENAISALMKLSKHATGPENIIAHNGLKPVVYVLRNGLSLEARQIAAAIIFYLCSVKEYRKIIGENHDVIHGLVKLVKEGTACGKKNAVVAIFGLLLLPRNHQRVLESGVVHALVSILASSDKEELVTEALAVLAALAENFDGANAVFEASALSLIIGMLRSATSCVGKEHCASILLSLSVNVGVDVVGVLAKDVTLMPLLYSLLTDGNSHAAKKARLLIKVLQDFNETASSRLKGSSILREMNGLELRN 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02812 654 SUPERFAMILY RING/U-box 246 319 - -
Trre16g02812 654 Pfam Armadillo/beta-catenin-like repeat 380 412 IPR000225 GO:0005515
Trre16g02812 654 SMART arm_5 376 417 IPR000225 GO:0005515
Trre16g02812 654 SMART arm_5 502 543 IPR000225 GO:0005515
Trre16g02812 654 SMART arm_5 418 459 IPR000225 GO:0005515
Trre16g02812 654 ProSiteProfiles U-box domain profile. 244 318 IPR003613 GO:0004842|GO:0016567
Trre16g02812 654 Gene3D - 347 649 IPR011989 -
Trre16g02812 654 PANTHER U BOX DOMAIN-CONTAINING 70 627 - -
Trre16g02812 654 FunFam RING-type E3 ubiquitin transferase 325 638 - -
Trre16g02812 654 SUPERFAMILY ARM repeat 357 628 IPR016024 -
Trre16g02812 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 556 IPR000225 GO:0005515
Trre16g02812 654 CDD RING-Ubox_PUB 246 298 IPR045210 -
Trre16g02812 654 SMART Ubox_2 248 311 IPR003613 GO:0004842|GO:0016567
Trre16g02812 654 Pfam U-box domain 246 313 IPR003613 GO:0004842|GO:0016567
Trre16g02812 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 319 IPR013083 -
Trre16g02812 654 Coils Coil 173 193 - -
Trre16g02812 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Trre16g02812 654 FunFam RING-type E3 ubiquitin transferase 245 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02812 Trre-Chr16 23840012 23842084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02812 4 632 U-box Gene Family AT1G60190 38.166 2.85e-152 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02812 - - tpra:123884536 1131.7