Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02807 ATGGCAGCTCGCACACTTTCTCGTCTGCTCTCTCGCTCTCTATCTTCTTCTTCTTCTTCTTCTTCTTATGGAGGTTCTGCTTCTTTGCTTCGTTCATCACTAGGAAGAAAATCTGAAGGATGGATAAACACAAACAGATTTAGCACTGCTGCAGCTGTTGAGGAATTGATTACTCCACAAGTTTCAATAAATTATACACAGCATCTCATAAATGGTCAATTTGTGGATTCTGCATCAGGGAAAACATTTCCAACTTATGATCCACGCACAGGGGAAGCGATTGCTCATGTTGCTGAAGGCGATGCTGAAGATATTAACCGTGCAGTATCAGCAGCTCGTGAGGCCTTTGATAATGGACCTTGGCCTAAAATGTCTGCTTATGAAAGATGTCGTATATTGCTGCGCTTTGCTGATTTGGTTGAGAAACACAATGACGAGATTGCAGCTTTGGAAGCATGGAACAATGGAAAGCTTTATGAACAGGCTGCCAAGGCTGAATTACCTATGTTTGTGCGTTTATTTCGCTATTATGCTGGTTGGGCAGATAAAATTCATGGGTTGACAGTTCCAGCTGATGGAGATTATCATGTCCAGACATTGCATGAACCAATTGGTGTAGCAGGACAAATTATACCTTGGAATTTTCCTCTACTTATGTTTGCTTGGAAAGTTGGACCAGCTCTAGCATGTGGTAATACCATTGTCCTCAAGACTGCTGAGCAAACACCGCTAACAGCGCTCCTTGTGGCAAAACTACTTCATGAGGCCGGTCTTCCCCCAGGTGTTCTGAATATAGTTTCTGGGTATGGTCCAACTGCTGGCGCACCTCTTGCTAGTCATATGGATGTAGACAAGTTAGCATTCACCGGATCAACAGATACCGGAAAAACTGTACTTGAACTGGCTGCAAGAAGCAATCTTAAGCCAGTAACATTGGAACTTGGAGGGAAATCACCTTTCATTGTTTTTGAGGATGCTGATGTTAACAAGGCTGTTGAAATTGCACACTTTGCTTTGTTCTTTAATCAGGGGCAATGTTGCTGTGCTGGATCCCGTACCTTTGTACATGAGCGTATCTATGACGAGTTCTTGGAGAAATCAAAGGAACGTGCTTTGCGACGCGTTGTTGGTGATCCATTTAAGAAGGGTGTAGAACAAGGTCCTCAGATTGATTCAAAACAATTTGAGAAAGTGCTTAGGTACATAAGGTCTGGAATTGATAGCAATGCTACTCTTGAATGTGGAGGTGGGAGATTGGGTTCAAAAGGCTTCTTTGTCCAGCCAACTGTATTCTCCGATGTTCAGGATGATATGTTGATAGCAAAAGATGAAATCTTTGGCCCAGTTCAGACCATCTTGAAGTTCAAGGACACTGATGAAGTGATACGACGGGCAAATGCGACGCGTTATGGTTTAGCGGCAGGTGTTTTCACAAAAAATGTGAGCACAACCAACACTATGATGAGGGCACTAAGAGCTGGAACAGTGTGGATTAATTGCTTTGATGTGTTTGATGCTGCAATTCCTTTTGGTGGTTACAAAATGAGTGGAATTGGTAGGGAGAAAGGAATATACAGTCTTCACAACTATCTGCAGGTAAAAGCTGTGGTGACTCCACTGAACAATCCTGCATGGTTGTGA 1641 0.4302 MAARTLSRLLSRSLSSSSSSSSYGGSASLLRSSLGRKSEGWINTNRFSTAAAVEELITPQVSINYTQHLINGQFVDSASGKTFPTYDPRTGEAIAHVAEGDAEDINRAVSAAREAFDNGPWPKMSAYERCRILLRFADLVEKHNDEIAALEAWNNGKLYEQAAKAELPMFVRLFRYYAGWADKIHGLTVPADGDYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALLVAKLLHEAGLPPGVLNIVSGYGPTAGAPLASHMDVDKLAFTGSTDTGKTVLELAARSNLKPVTLELGGKSPFIVFEDADVNKAVEIAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKERALRRVVGDPFKKGVEQGPQIDSKQFEKVLRYIRSGIDSNATLECGGGRLGSKGFFVQPTVFSDVQDDMLIAKDEIFGPVQTILKFKDTDEVIRRANATRYGLAAGVFTKNVSTTNTMMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVTPLNNPAWL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02807 546 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 340 351 IPR016160 GO:0016491
Trre16g02807 546 Pfam Aldehyde dehydrogenase family 74 536 IPR015590 GO:0016491
Trre16g02807 546 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 312 319 IPR029510 GO:0016491
Trre16g02807 546 FunFam Aldehyde dehydrogenase, putative 508 534 - -
Trre16g02807 546 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 70 534 IPR016162 GO:0016491
Trre16g02807 546 CDD ALDH_F2BC 63 538 - -
Trre16g02807 546 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 70 339 - -
Trre16g02807 546 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 316 505 IPR016163 GO:0016620
Trre16g02807 546 SUPERFAMILY ALDH-like 60 541 IPR016161 GO:0016491
Trre16g02807 546 FunFam Mitochondrial aldehyde dehydrogenase 2 318 507 - -
Trre16g02807 546 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 51 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02807 Trre-Chr16 23809429 23813195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02807 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 77.879 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02807 K00128 - zju:107405734 924.85