Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02801 ATGGAAATATCTCCGTCTCCGCAACCACCTCCCCATGCGTCGCAAACTTTTAATGACGACAATATCAGTAACAACAAAGAAACAACAACTTGTTCATCTATAAGCAGAATCAGTCCAGTTATTTTGTTGGTTATAATAGTACTAGCAATTATCTTCTTTCTCTATGGACTTATCCAACTAGTCCTATGGTTTCTGATGAAAAGGCCATCTTCTTCATCTCATTATAATTCCAACAGATTCCAAGAATCAACCCGAACCCGCGCTTTTCAGAGACAACTACAACACCTGTTCCATTTACATGATTCAGGTCTAGATCAAGCTGTCATAAACACACTTCCTATTTTCAGCTACAAAGATTTATTGGGTTTGAAGGAACCTTTTGATTGTGCTGTATGTCTCTGTGAGTTTTCTGAGCAAGAGAAGCTGAGATTGGTTCCAATGTGTAGCCATGCATTTCACATGAATTGTCTTGACACATGGCTTCTCTCAAATTCTACATGTCCTCTTTGTAGAGCAAATATCTCTAACTCTAGTTTCCTTTTGGAGAATGTTGATGATTCTTTGGTTACTCAAAGAGAAATAATTGTTGAGGAAGAAGAAAAAGTTGGGAAAAGAGTGTTTTCTGCGAGACTTGGAAAGTTCAGAAGTAATGGATTGGATTTGGAGGATGGTAGTAGCTGTAATTTGGATGAGAGGAGATGTTATTCAATGAGTTCATATCAGTATGTATTTTGTGATTCAAATTTGCAAGTGGTTTTGTCTCAATCTTGTTGTGATGATGAAAATGGAAATGTAGAGGGAAAGAGGATAGGGAATACAACCAAAGGTGAGAGTTTCTCTGTTTCTAAGATATGGCTTTGGTCTAAGAAGAACAAATTTACTAGTTCTAATGCTGATTTTCCATGA 906 0.3698 MEISPSPQPPPHASQTFNDDNISNNKETTTCSSISRISPVILLVIIVLAIIFFLYGLIQLVLWFLMKRPSSSSHYNSNRFQESTRTRAFQRQLQHLFHLHDSGLDQAVINTLPIFSYKDLLGLKEPFDCAVCLCEFSEQEKLRLVPMCSHAFHMNCLDTWLLSNSTCPLCRANISNSSFLLENVDDSLVTQREIIVEEEEKVGKRVFSARLGKFRSNGLDLEDGSSCNLDERRCYSMSSYQYVFCDSNLQVVLSQSCCDDENGNVEGKRIGNTTKGESFSVSKIWLWSKKNKFTSSNADFP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02801 301 CDD RING-H2_EL5-like 128 171 - -
Trre16g02801 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 179 IPR013083 -
Trre16g02801 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 35 285 - -
Trre16g02801 301 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Trre16g02801 301 Pfam Ring finger domain 128 171 IPR001841 -
Trre16g02801 301 SMART ring_2 129 170 IPR001841 -
Trre16g02801 301 SUPERFAMILY RING/U-box 108 176 - -
Trre16g02801 301 MobiDBLite consensus disorder prediction 1 24 - -
Trre16g02801 301 FunFam E3 ubiquitin-protein ligase ATL6 92 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02801 Trre-Chr16 23757000 23757905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02801 26 298 C3H Transcription Factor Family AT2G18650 39.589 6.46e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02801 - - mtr:11408711 451.055