Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02790 ATGGCATCATTTGCAGGAACTACACAAAAGTGTAATACATGTCAAAAGAAAGTCTATTGGGTGGAACAACTTACTGCTGACAACAAAGTGTACCACAAGTCTTGCTTCAGATGCCACCATTGCAAGGGCACCCTTAAGCTGAGTAACTTTTGTTCCTTTGAGGGTGTCCTATACTGCAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGTAGTTTGGACAAAAGTTTTGAAGGCATTGCAAGAATTTATAGAGTTGAAAGATCTACTATTCAGGTCCAAGCCAATAACAAAGTTTCAAGATTTTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGCAACAAAACAGTGTACCCAATTGAAAAGGTATAA 372 0.379 MASFAGTTQKCNTCQKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNFCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIARIYRVERSTIQVQANNKVSRFFAGTQEKCVGCNKTVYPIEKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02790 123 SMART lim_4 10 62 IPR001781 -
Trre16g02790 123 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Trre16g02790 123 PANTHER OS06G0237300 PROTEIN 2 122 - -
Trre16g02790 123 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Trre16g02790 123 FunFam LIM domain and actin-binding 1 5 75 - -
Trre16g02790 123 Pfam LIM domain 11 65 IPR001781 -
Trre16g02790 123 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Trre16g02790 123 Gene3D Cysteine Rich Protein 5 75 - -
Trre16g02790 123 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02790 Trre-Chr16 23648032 23650430 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g02790 LIM 7.4e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02790 K09377 - gmx:100792627 238.424