Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02786 ATGTCGCTCAAAAGGGGTCCCGATGATAACAAGACTCCAGATGATAAGCGTAGAAAGCCACCTCCTTTTTGCAGTGTGGTGCGTGAGGTGATGAAGTTGCAATCAGTCAGGAATTTGATGGAACCGATTTTAGAACCCTTGGTTCGTCGAGTGGTTAAGGAGGAAGTTGAGTTGGCCCTAAAGAAGCATTTGAGCAGCATGAAACAAACCTGTGGAAAAGAGTTGAATACTAAAGAATTAAGAACTTTGCAGCTTCAGTTTGAAAACAGCATTTCTCTCCCTGTCTTCACAGGGGCTCGAATTGAAGGAGAAGATGGCTCAAACTTAAGGATAAGATTAGTTGATGCTTTAACAGGGAAGGTTGTTTGTACAGGAGCTGAATCTTCAGCTAAGGTGGAAATTGTAGTCCTTGAGGGTGATTTCGAAGAAGAAAGTGATGTTTGGATGCCTGAAGATTTCAAGAACAATATTGTCAGAGAGAGGGATGGAAAAAAGCCCCTCCTTACGGGAGATGTGATTTTATATCTTAAAGATGGGTTTTGTATGGTGGGTGAAATTTCATATACAGATAATTCAAGCTGGACAAGGAGCCGTAGGTTCCGGCTTGGAGCAAGAGTATTGGACAGCTTTGATGGTATTAGAATAAGAGAAGCAAAGACAGATTCATTTATCGTCAGGGATCACAGAGGAGAATTGTACAAGAAACACCACCCTCCAAGTCTGTCGGATGAAGTTTGGAGACTGGAAAAGATAGGCAAAGATGGAGCTTTCCACCGGCGTTTGAGTCGTGAAAAGATCCGCACGGTTAAAGATTTTCTCACACTACTCAATCTCGATCCAGCAAAGCTGCGAACTATATTAGGTACTGGGATGTCTGCAAAGATGTGGGAAGTAACTGTAGAGCATGCCCGGACTTGTGTTCTTGATACAACAAGGCACGTGTCCTTCGCCGCTCATTCTCAACAACCTCATGTGGTATTCAATGCCGTGGGACAAGTGACAGGACTGCTCTCTGAATGCGAGTATGTCGCTGTAGATAAGCTGTCTGAAACCGAAAAGGCTGATGCTCAAATCTCGGTTATTTCTGCACTTACCCAAGGCGATTTTGCCTCTTTAGAAGATGAGACCTCCCTAATGGATGGTTATTCACATTTAACTAATGTACATTACTCCCCTAGCTCTCCAAGAACTGAGGGATCAAGTGCCAACAAGCTTTTGGCTCCGCAAAAGACTGGAGGATTCAATTACACACAAGAAAGCGCCTCTTCCACAGATATCATGCCATCTATTTATTCGGTCGGTGGAAGTAGTGGCTTGGATGACTATGGCTTGCCGAATTTTGACAGCATCGGACTTAGATATGATCAGAATCTTGGCTTTCCAATGCAAGTATCCAACTCTTTGATCTGCGACACAGATTCAATAGTCCATGCTTTCGGTGATGATGATCATCTGCAATTTTTCGATGCTGATCTTCAATCTCAGTGCCACATTGAAGCAGATTTACAGCGTGCTGTTGATAGCTTCATGCTGGCACCTTCTCCATCTATGGCTAATGGAAAAGCTCAGAGACGATGGAGAAAAGTAGTCAATGTTCTAAAATGGTTCTTGGTGAGGAAACGACGAAACCAATTATATAGGTAA 1644 0.4331 MSLKRGPDDNKTPDDKRRKPPPFCSVVREVMKLQSVRNLMEPILEPLVRRVVKEEVELALKKHLSSMKQTCGKELNTKELRTLQLQFENSISLPVFTGARIEGEDGSNLRIRLVDALTGKVVCTGAESSAKVEIVVLEGDFEEESDVWMPEDFKNNIVRERDGKKPLLTGDVILYLKDGFCMVGEISYTDNSSWTRSRRFRLGARVLDSFDGIRIREAKTDSFIVRDHRGELYKKHHPPSLSDEVWRLEKIGKDGAFHRRLSREKIRTVKDFLTLLNLDPAKLRTILGTGMSAKMWEVTVEHARTCVLDTTRHVSFAAHSQQPHVVFNAVGQVTGLLSECEYVAVDKLSETEKADAQISVISALTQGDFASLEDETSLMDGYSHLTNVHYSPSSPRTEGSSANKLLAPQKTGGFNYTQESASSTDIMPSIYSVGGSSGLDDYGLPNFDSIGLRYDQNLGFPMQVSNSLICDTDSIVHAFGDDDHLQFFDADLQSQCHIEADLQRAVDSFMLAPSPSMANGKAQRRWRKVVNVLKWFLVRKRRNQLYR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02786 547 PANTHER OS02G0177800 PROTEIN 4 386 IPR012416 GO:0005516
Trre16g02786 547 Pfam Calmodulin binding protein C-terminal domain 319 368 IPR046829 -
Trre16g02786 547 Pfam Calmodulin binding protein-like N-terminal domain 83 228 IPR046831 -
Trre16g02786 547 Pfam Calmodulin binding protein central domain 240 306 IPR046830 -
Trre16g02786 547 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02786 Trre-Chr16 23590041 23594230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02786 5 354 Calmodulin-binding Proteins AT5G62570 60.399 7.54e-151 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02786 - - gmx:100793156 869.766