LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g02785	ATGTCGCTCAAAAGGGGTCCCGATGATAACAAGACTCCAGATGATAAGCGTAGAAAGCCACCTCCTTTTTGCAGTGTGGTGCGTGAGGTGATGAAGTTGCAATCAGTCAGGAATTTGATGGAACCGATTTTAGAACCCTTGGTTCGTCGAGTGGTTAAGGAGGAAGTTGAGTTGGCCCTAAAGAAGCATTTGAGCAGCATGAAACAAACCTGTGGAAAAGAGTTGAATACTAAAGAATTAAGAACTTTGCAGCTTCAGTTTGAAAACAGCATTTCTCTCCCTGTCTTCACAGGGGCTCGAATTGAAGGAGAAGATGGCTCAAACTTAAGGATAAGATTAGTTGATGCTTTAACAGGGAAGGTTGTTTGTACAGGAGCTGAATCTTCAGCTAAGGTGGAAATTGTAGTCCTTGAGGGTGATTTCGAAGAAGAAAGTGATGTTTGGATGCCTGAAGATTTCAAGAACAATATTGTCAGAGAGAGGGATGGAAAAAAGCCCCTCCTTACGGGAGATGTGATTTTATATCTTAAAGATGGGTTTTGTATGGTGGGTGAAATTTCATATACAGATAATTCAAGCTGGACAAGGAGCCGTAGGTTCCGGCTTGGAGCAAGAGTATTGGACAGCTTTGATGGTATTAGAATAAGAGAAGCAAAGACAGATTCATTTATCGTCAGGGATCACAGAGGAGAATTGTACAAGAAACACCACCCTCCAAGTCTGTCGGATGAAGTTTGGAGACTGGAAAAGATAGGCAAAGATGGAGCTTTCCACCGGCGTTTGAGTCGTGAAAAGATCCGCACGGTTAAAGATTTTCTCACACTACTCAATCTCGATCCAGCAAAGCTGCGAACTATATTAGGTACTGGGATGTCTGCAAAGATGTGGGAAGTAACTGTAGAGCATGCCCGGACTTGTGTTCTTGATACAACAAGGCACGTGTCCTTCGCCGCTCATTCTCAACAACCTCATGTGGTATTCAATGCCGTGGGACAAGTGACAGGACTGCTCTCTGAATGCGAGTATGTCGCTGCTGATGCTCAAATCTCGGTTATTTCTGCACTTACCCAAGGCGATTTTGCCTCTTTAGAAGATGAGACCTCCCTAATGGATGGTTATTCACATTTAACTAATGTACATTACTCCCCTAGCTCTCCAAGAACTGAGGGATCAAGTGCCAACAAGCTTTTGGCTCCGCAAAAGACTGGAGGATTCAATTACACACAAGAAAGCGCCTCTTCCACAGATATCATGCCATCTATTTATTCGGTCGGTGGAAGTAGTGGCTTGGATGACTATGGCTTGCCGAATTTTGACAGCATCGGACTTAGATATGATCAGAATCTTGGCTTTCCAATGCAAGTATCCAACTCTTTGATCTGCGACACAGATTCAATAGTCCATGCTTTCGGTGATGATGATCATCTGCAATTTTTCGATGCTGATCTTCAATCTCAGTGCCACATTGAAGCAGATTTACAGCGTGCTGTTGATAGCTTCATGCTGGCACCTTCTCCATCTATGGCTAATGGAAAAGCTCAGAGACGATGGAGAAAAGTAGTCAATGTTCTAAAATGGTTCTTGGTGAGGAAACGACGAAACCAATTATATAGCTTGCCAGAGGTTAAAGAGCTATTTTGCTCTTCTCTTTTGTTGTTTAAAATTGAGTTTGTAAATACTTGGATGTTTTGTTGGTAG	1698	0.4287	MSLKRGPDDNKTPDDKRRKPPPFCSVVREVMKLQSVRNLMEPILEPLVRRVVKEEVELALKKHLSSMKQTCGKELNTKELRTLQLQFENSISLPVFTGARIEGEDGSNLRIRLVDALTGKVVCTGAESSAKVEIVVLEGDFEEESDVWMPEDFKNNIVRERDGKKPLLTGDVILYLKDGFCMVGEISYTDNSSWTRSRRFRLGARVLDSFDGIRIREAKTDSFIVRDHRGELYKKHHPPSLSDEVWRLEKIGKDGAFHRRLSREKIRTVKDFLTLLNLDPAKLRTILGTGMSAKMWEVTVEHARTCVLDTTRHVSFAAHSQQPHVVFNAVGQVTGLLSECEYVAADAQISVISALTQGDFASLEDETSLMDGYSHLTNVHYSPSSPRTEGSSANKLLAPQKTGGFNYTQESASSTDIMPSIYSVGGSSGLDDYGLPNFDSIGLRYDQNLGFPMQVSNSLICDTDSIVHAFGDDDHLQFFDADLQSQCHIEADLQRAVDSFMLAPSPSMANGKAQRRWRKVVNVLKWFLVRKRRNQLYSLPEVKELFCSSLLLFKIEFVNTWMFCW	565

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g02785	565	Pfam	Calmodulin binding protein central domain	240	306	IPR046830	-
	Trre16g02785	565	Pfam	Calmodulin binding protein-like N-terminal domain	83	228	IPR046831	-
	Trre16g02785	565	PANTHER	OS02G0177800 PROTEIN	4	350	IPR012416	GO:0005516
	Trre16g02785	565	MobiDBLite	consensus disorder prediction	1	22	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g02785	Trre-Chr16	23590041	23594437	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g02785	5	355	Calmodulin-binding Proteins	AT5G62570	59.091	1.62e-146	425

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g02785	-		-	gmx:100793156	846.654