Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02776 ATGGCTTCTTCCTCAGATCCTCCTCCTTCTTCCAGACACCACACTTACGACCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGCGATGATGTTCGTACTGTTGGTCTCGACGATGCTGCTGCTCGATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTTTGGAGAGCATCGGGGTTCTTGCTAGAAAGGCTAAGAATCAGTATACATGGAAAGGGTTTGGGGCAATTCCTGTTGCTTTGCAGGAGCTCAAGGAAGAGGGTTTATGGCAGAATGTCAATTCTTCACAAGAAGGTGGGAATGAAGATATAAAGGTATCTGATGAAGAGGATGAAGATGAATCATTATCACAACCCACTGGAAGTCAGAATGAATCATTATCCCAACCTACTGGAAGTCAGAGTGACAATTTGAACCCTAATTCTGCTTTTCCCAGATCTCTGAAAAATGATAGAAGAGAAAAATCTCTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATCTGGAAATGATATCCCTTGATGATGCCGCAAGGTTGTTGCTTGGAGATGCGTATAATTCATCAACAATGAGAACAAAAGTTAGGCGCCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTTATCGAGAAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATGGAATGAGGCATCACTTTACAATTCAAAACAAAATGAGTCTAGGAAAAGGGCATTTGGAAATGATGTTACAAACATTAGCTTTGCGCGGAACAGAACAGATTTGTTCATGGGTGGGGACTTCGGCCAGAACCTTAAGAAGCAAAAGACAATGGAAAATGATGGTGGGCTGTATCAGGATGACAAGAACATTATGAAACAAAAACAGAACTATCAGTTTGGTCCTTTTGCTCCAGCCTTTGTATCCAAAGCCGGAACCTCAGAGAACAAAGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCAACTGAGCATTGCCCTCAGTATCAAAACCAAGGCAAATAA 1083 0.4247 MASSSDPPPSSRHHTYDRKQKSLGLLCTNFLSLYNRDDVRTVGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPVALQELKEEGLWQNVNSSQEGGNEDIKVSDEEDEDESLSQPTGSQNESLSQPTGSQSDNLNPNSAFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTWNEASLYNSKQNESRKRAFGNDVTNISFARNRTDLFMGGDFGQNLKKQKTMENDGGLYQDDKNIMKQKQNYQFGPFAPAFVSKAGTSENKVKQVHDWESLATEHCPQYQNQGK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02776 360 PANTHER TRANSCRIPTION FACTOR E2F 8 355 IPR015633 GO:0000978|GO:0006357
Trre16g02776 360 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Trre16g02776 360 Pfam E2F/DP family winged-helix DNA-binding domain 164 242 IPR003316 GO:0005667|GO:0006355
Trre16g02776 360 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Trre16g02776 360 SMART E2F_TDP_2 162 242 IPR003316 GO:0005667|GO:0006355
Trre16g02776 360 MobiDBLite consensus disorder prediction 102 157 - -
Trre16g02776 360 FunFam E2F transcription factor 8 13 85 - -
Trre16g02776 360 SUPERFAMILY "Winged helix" DNA-binding domain 164 243 IPR036390 -
Trre16g02776 360 MobiDBLite consensus disorder prediction 127 156 - -
Trre16g02776 360 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Trre16g02776 360 FunFam E2F transcription factor-like E2FE 157 244 - -
Trre16g02776 360 Gene3D - 157 244 IPR036388 -
Trre16g02776 360 Gene3D - 13 86 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02776 Trre-Chr16 23432045 23434823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02776 13 358 E2F-DP Transcription Factor Family AT3G48160 54.520 9.13e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre16g02776 E2F_TDP 9.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02776 K09391 - gmx:100795252 458.759